Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2050g00002 ATGGGACAAAAGGATGCTTATGTCGGTGATGAGGCTCAATCCAAGAGAGGTATTTTGACTCTAAAATACCCAATTGAGCATGGCATAGTTAACAACTGGGACAATATGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTACGTGTGGGCCCAGAAGAGCACCCTGTTCTCCTCACAGAAGCACCACTCGATCCCAAGGCCAACCGAGAGAAAATGACACAGATTATGTTTGAGGCCTTCAACACTCCAGCTATGTATGTTGCCATCCAGACAGTGCTTTCCCTTTATGCTAGTGGTCGTACAACTGTACCTCTAACTGGAGATGTGCGAAGGCTTTGGGTGAATACTTGGCTGAAAGGAATATCATGGGAATTTGTTGGGGCAAGATGA 393 0.4555 MGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDNMEKIWHHTFYNELRVGPEEHPVLLTEAPLDPKANREKMTQIMFEAFNTPAMYVAIQTVLSLYASGRTTVPLTGDVRRLWVNTWLKGISWEFVGAR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2050g00002 130 PRINTS Actin signature 69 82 IPR004000 -
Vium2050g00002 130 PRINTS Actin signature 94 113 IPR004000 -
Vium2050g00002 130 PRINTS Actin signature 15 37 IPR004000 -
Vium2050g00002 130 PRINTS Actin signature 3 14 IPR004000 -
Vium2050g00002 130 FunFam Actin, alpha skeletal muscle 1 118 - -
Vium2050g00002 130 SUPERFAMILY Actin-like ATPase domain 2 103 IPR043129 -
Vium2050g00002 130 Pfam Actin 4 103 IPR004000 -
Vium2050g00002 130 ProSitePatterns Actins signature 1. 7 17 IPR004001 -
Vium2050g00002 130 CDD NBD_sugar-kinase_HSP70_actin 28 102 - -
Vium2050g00002 130 PANTHER ACTIN 5 103 IPR004000 -
Vium2050g00002 130 Gene3D - 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2050g00002 Vium-Chr2050 24940 26284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2050g00002 1 103 Cytoskeleton Gene Families AT3G46520 95.146 1.82e-69 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2050g00002 K10355 - vum:124828969 274.248