Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00037 ATGAGTTTCCTTCATTTCCTCCTTCTGTGTGTGTTGGTTGCATTTTCCAGTTCACACCTGGTTCGTGGAAATGCAGAGCTAAGAGCTCTGATGGACCTGAAAATATCTCTGGACCCAGAGGACACGGTGCTTGCCTCGTGGACCAGTGATGGTGATCCGTGCAGTGGTTCGTTCTTGGGGGTTGCGTGCAACGAGCATAACAAAGTGGCGAATATATCATTGCCAGGAAGAGGTCTTTCTGGCCGTGTCTCTCCAGCTGTGGCTGAACTCAGATGCTTGTCAGGTCTATACCTACATTTCAACCACCTCTCTGGGGACATACCCAGAGAGATTGCAAATCTAACAGAATTGATGGATCTCTATCTCAACGTTAATAATCTATCTGGAACAATTCCCCCTGATATCGGGAACATGATTAGTCTCCAAGTGCTGCAGTTAGGCTATAACCAGTTAGAGGGGAACATACCCAAGGAACTGGGTTCGTTGAAGCAGCTTAATGCTATGTCTTTGCAACATAACAGATTAACTGGTCAGATTCCTCTAACCTTGGGTAGCTTGGAGAACCTAAGGAAGCTATATTTGAGCTCTAACAACTTCAATGGCATAATCCCTGCAACACTAGCTGATATTGCAAACTTGGAAGTTCTAGATATTCAAAACAATTCTCTTTCAGGGACAGTTCCTTCTGCATTGCGGAGATTAGGGGAAGGATTCAAAGGTGCAGACAACCCAGATCTCTGCGCAGTTGGGTTTTCTACTTTGAAAACTTGCAACAATGATACAATATATGGCGTTGGTCAGATTAGTTCCGGAAATATATCCATAAATAATAATCCCTCGATAACTTTCTCGAATCCTGCAAATACCCACTTGAACTGTAGCCAAATTCATTGCTCAAAATCAAGAAGGTTTCTCCATCTTGTCATTGCAGCAAGTGTGACAACTACCATTATAACATTCTTAAGTTCTGGAATTTTCGTGTTTGTCAGATACCGTCGCCATAGGCAGAGGGTTAGGAACACGTCAGATTGTTCTGAAAGCCAACCTAGTCCTAACCTGGCCAAAGATTTCTACAGAAGTTCATCACCACTTGTTAATCTTGAGAATTACTATAATGGTTGGGACTCAGTGGCCGATGGTCAAAATGCAAGTGGATTATCCCTTGAATATCTGAACCGTTTTAGATTTAATATAGATGAGATAGAATCCGCAACACAACACCTTTCCGAGGCCAATCTACTGGGTAAGAGCAAACTCTCAGCAGTCTATAAAGGTGTTCATAGAGACGGTTCTCTTGTGGCCATTAGAAGCATCAGCGCGACTTGCTGCAAAACTGAAGAAGATGAATTTTTGAAGGGGTTGATCCTATTAACCACTCTGAGACATGAAAATATTGTTAAGATGAAAGGTTTCTGTTACTCAAGGAGCAGAGGTGAATGGTATTTTGTCTATGACTTTGCCACCAGGGGCAATCTGTCTCAATATCTTGACAAGGAAGATGGAAGTGACAGTGTACTAGAATGGTCGAAAAGGGTTTCTATCATCAGGGGTATTGCAAAAGGTATTGGTTATTTGCACAGCGACGAAGCAAGCAAGCCTACAATAGTACACCAAAACGTTTCAGTTGAAAAGGTTATTCTAGACCATGAATTTAACCCCTTGATCATGGATGCTGGCCTCCCTAAGCTTCTTGCAGAGGATGTAGTTTTCTCAGCTCTTAAAGCAAGTGCTGCCATGGGATACCTTGCACCAGAATATATTACAACTGGGCGATTTACGGAGAAGAGTGACACATATGCTTTTGGGGTCATTGTCCTTCAAGTTCTATCTGGAAAGGCATTGGTGGGGGGTTCAATCCGGGTTGCAGTTGAAGCTTTTAGATTTGAAGATTTTGTTGACACAAATCTGAAGGGAAATTATTCTAAATCTGAAGCTGCAATTCTTTCAAAGCTTGCAATTATGTGCACCAATGAAGTGCCAGAGCAAAGGCCAACCATGGTGGAGGTGATTCAAGAGCTGGCCATGCTTCCTCTCCATCCTTCATAA 2046 0.4277 MSFLHFLLLCVLVAFSSSHLVRGNAELRALMDLKISLDPEDTVLASWTSDGDPCSGSFLGVACNEHNKVANISLPGRGLSGRVSPAVAELRCLSGLYLHFNHLSGDIPREIANLTELMDLYLNVNNLSGTIPPDIGNMISLQVLQLGYNQLEGNIPKELGSLKQLNAMSLQHNRLTGQIPLTLGSLENLRKLYLSSNNFNGIIPATLADIANLEVLDIQNNSLSGTVPSALRRLGEGFKGADNPDLCAVGFSTLKTCNNDTIYGVGQISSGNISINNNPSITFSNPANTHLNCSQIHCSKSRRFLHLVIAASVTTTIITFLSSGIFVFVRYRRHRQRVRNTSDCSESQPSPNLAKDFYRSSSPLVNLENYYNGWDSVADGQNASGLSLEYLNRFRFNIDEIESATQHLSEANLLGKSKLSAVYKGVHRDGSLVAIRSISATCCKTEEDEFLKGLILLTTLRHENIVKMKGFCYSRSRGEWYFVYDFATRGNLSQYLDKEDGSDSVLEWSKRVSIIRGIAKGIGYLHSDEASKPTIVHQNVSVEKVILDHEFNPLIMDAGLPKLLAEDVVFSALKASAAMGYLAPEYITTGRFTEKSDTYAFGVIVLQVLSGKALVGGSIRVAVEAFRFEDFVDTNLKGNYSKSEAAILSKLAIMCTNEVPEQRPTMVEVIQELAMLPLHPS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00037 681 Pfam Protein tyrosine and serine/threonine kinase 412 673 IPR001245 GO:0004672|GO:0006468
Vium2045g00037 681 Gene3D Ribonuclease Inhibitor 24 305 IPR032675 -
Vium2045g00037 681 SUPERFAMILY L domain-like 37 233 - -
Vium2045g00037 681 FunFam Protein NSP-INTERACTING KINASE 2 379 486 - -
Vium2045g00037 681 FunFam Protein NSP-INTERACTING KINASE 2 487 677 - -
Vium2045g00037 681 ProSiteProfiles Protein kinase domain profile. 408 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2045g00037 681 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vium2045g00037 681 Pfam Leucine rich repeat 188 234 IPR001611 GO:0005515
Vium2045g00037 681 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 674 - -
Vium2045g00037 681 Gene3D Transferase(Phosphotransferase) domain 1 488 676 - -
Vium2045g00037 681 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
Vium2045g00037 681 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Vium2045g00037 681 SMART LRR_typ_2 138 162 IPR003591 -
Vium2045g00037 681 SMART LRR_typ_2 90 114 IPR003591 -
Vium2045g00037 681 SMART LRR_typ_2 186 209 IPR003591 -
Vium2045g00037 681 SMART LRR_typ_2 210 233 IPR003591 -
Vium2045g00037 681 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00037 Vium-Chr2045 319820 322964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00037 6 521 Miscellaneous Gene Families AT4G22730 51.901 1.10e-180 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vium2045g00037 PK_Tyr_Ser-Thr 9.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00037 - - gmx:100784155 1094.34