Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00030 ATGTCTCTCTCCTCAATTCTATCTCAAACCCACTATTTCTCTGATCAACCCATAACTACCCTTATTCTCTTCTTCCTCTTCTTCCTAGTTGCGTCCTACCTATTCCTCAAACCCAACCTCCGAAACCTACCGCCGGGTCCACCGGGCCTCCCCTTCTTCGGGAACCTTTTATCTCTTCACCCAGATCTTCACACTTACTTCGCCGCCTTGGCCCAGATACACGGTCCAATTTTCAAACTTCGACTAGGGAGCAAGCTCGCCATCGTCATAACTAAACCCACCCTTGCTCGCGAGGTCCTCAAAGACAACGATACTGTTTTCGCCAACCGCGACGTCCCCGTAGCCGGTAGGATTGCCGCCTATGGCGGCACCGACATAGTATGGACCCCGTACGGAGCCGAATGGCGGATGCTGAGGAAAGTGTGCGTGGTGAAGATGTTGAGCAACGTCACCCTAGATTCCGTCTACGATCTGCGGCGCAACGAGGTGTGCAAGATGGTGTCGTATTTGTACGAACGAGCGGGGAGTGCGGTGAACGTGGGGGAGCAGGTGTTTCTAGCGGTGATGAATGTGATAACCAGTATGATGTGGGGCGGGGAGGTGGAAGGGGTGGATAGGGAGATTTTGGGGGCGGAGTTCAGGGAGTTGGTGGCGGAGATGACGCAGCTGCTGGGGAAGCCCAATGTTTCGGACTTTTTTCCCGGGTTGGCCCGGTTCGATTTGCAGGGCGTGGAGAAAGAGATGCAGGCGCTGGTGCCCCGGTTCGATGAGATATTTGAAAGGATGATTGGTGAACGAGTGAAGGTGAATGAAAAAGAAGATGGGAAAAAGAAAGAAAGAAAAGATTTTCTGCAGTTTTTGTTGGATCTTAAGGATTCTGAAGGCCATGATTCAAAGACACCATTCACCATGACCCACCTTAAGGCCCTCCTCATGGATATGGTTGTGGGTGGAACCGATACATCTTCGAACACGATTGAGTTTGCAATGGCAGAAATGATGCAGAAGGCAGAAGTAATGAAGAAAGTCCAAGAAGAGTTGGAAGTCGTGGTTGGAAAAGATAGAATGGTAGAAGAGTCTGACATTCATAAGTTGCATTACTTGCAAGCAGTGATGAAAGAAACTCTTCGGTTGCATCCTGCACTTCCACTTCTAGTCCCACATAGCCCCAGTGAAACCAGCAACGTCGGAGGCTACACCATCCCAAAGGGTTCTCGAATCTTCATCAATGTGTGGGCCATTCATAGAGACCCTTCCGTTTGGGAGAAACCTCTGGAATTTGATCCTACAAGGTTCTTGGATGATAAGTGGGATTTCAGTGGCAATGACTTCAGTTATTTTCCCTTTGGATCTGGAAGAAGAATCTGTGCAGGAATAGCAATGGCTGAGAAGACTGTTCTGCATCTTCTTGCCACACTTGTGCACTTGTTTGACTGGACAATACCACAAGGAGACAAGTTAGAAACAGCAGAAAAATTTGGAATTGTTCTAAGAAAGAATGTTCCTCTGGTTGCTATTCCCACCCCACGCTTCTCCAACCCAAACTTTTATAAGTAG 1557 0.4875 MSLSSILSQTHYFSDQPITTLILFFLFFLVASYLFLKPNLRNLPPGPPGLPFFGNLLSLHPDLHTYFAALAQIHGPIFKLRLGSKLAIVITKPTLAREVLKDNDTVFANRDVPVAGRIAAYGGTDIVWTPYGAEWRMLRKVCVVKMLSNVTLDSVYDLRRNEVCKMVSYLYERAGSAVNVGEQVFLAVMNVITSMMWGGEVEGVDREILGAEFRELVAEMTQLLGKPNVSDFFPGLARFDLQGVEKEMQALVPRFDEIFERMIGERVKVNEKEDGKKKERKDFLQFLLDLKDSEGHDSKTPFTMTHLKALLMDMVVGGTDTSSNTIEFAMAEMMQKAEVMKKVQEELEVVVGKDRMVEESDIHKLHYLQAVMKETLRLHPALPLLVPHSPSETSNVGGYTIPKGSRIFINVWAIHRDPSVWEKPLEFDPTRFLDDKWDFSGNDFSYFPFGSGRRICAGIAMAEKTVLHLLATLVHLFDWTIPQGDKLETAEKFGIVLRKNVPLVAIPTPRFSNPNFYK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00030 518 Coils Coil 326 346 - -
Vium2045g00030 518 SUPERFAMILY Cytochrome P450 44 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 CDD CYP76-like 71 507 - -
Vium2045g00030 518 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 410 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 PANTHER OS08G0547900 PROTEIN 20 518 - -
Vium2045g00030 518 Pfam Cytochrome P450 44 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2045g00030 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Vium2045g00030 518 FunFam Cytochrome P450 - like protein 33 504 - -
Vium2045g00030 518 Gene3D Cytochrome P450 37 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00030 Vium-Chr2045 247480 250394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00030 10 517 Cytochrome P450 AT4G12300 58.447 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00030 - - vra:106769527 937.176