Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00021 ATGAATGCTTTCATTTTCATTCTTCTCACTTTTGTGTTGAGCTTCCATATTCATTTTGCTACAAGCAGTTCAAAAACATATATTGTTCATGTGAAGGGGCCACAGGATAGGACACTCGCTGAATTAGATGATTTGGAGAACTGGTATCATTCATTTTTGCCACCTACGATTATGAGCTCTGAGGAACAACCACGAATAATTTATTCATATCGGCACGTGATGAGTGGTTTTTCTGCAAGACTGACGGAACAAGAGCTGAGAGAAGTGGAAAAGAAGGATGGCTTTATCTCTGCTCGCCCCGAAATGATGCTACATCCCCAAACCACACATACCCCACAAGTTTTGGGGTTGCAGCAGCAAACGGGACTGTGGAAGGAATCGAACTTTGGAAAGGGAGTAATTGTTGGGGTGCTGGATACTGGAATCGTGCCTGACCATCCTTCATTCAATGATGCAGGAATGCCACCACCGCCACCCAGATGGAGAGGAAGATGTGAATTCCAGGTAACAACTTGTAACAACAAAATAATTGGAGCAAGGTATTTCGGCCGAGAAGTGAATGCAAGGAAAGGAGCAGATGCAATAATTGATGAAGAGGGACATGGGACTCACACAGCAAGCACAGCAGCTGGTGCTTTTGTTGATAATGCAGAAGTACTAGGAAATGCCAAAGGCACAGCAGCAGGGATTGCCCCTCATGCTCACCTGGCAATATACAAAGTATGTTTGGAAAAAGACTGCCCGGAAGGCAGTGTATTGGCCGCATTGGATGCAGCTGTGGAGGATGGCGTGGATGTAATATCAATATCCCTTGGCCTAAACGTGTCTCCTCCCTTTTTTTATGATAGCATCGCAATAGGCACGTTTGCAGCAATGCAGAAGGGAATCTTTGTAAGTTGTTCAGCGGGGAACTCTGGCCCTTTCTCTGGCACCTTGGTGAATGGAGCCCCTTGGATCCTCTCAGTTGGAGCAAGCAATGTTGACAGAAGCATTGTAGCAACAGCAAAGCTAGGAAACGGGCTAGAATTTGACGGCGAATCTGTTTTCCAGCCTTCCAATTATACTCCACTGCTACCCTTAGCCTATGCTGGTAATAATGGCAAACCTGAAGCTGCACTTTGTGCTACGGGATCCCTGAACTATATTGACTTCAGCGGCAAGGTTGTTTTGTGTGAGAGAGGAGGGGATACAGGAAGAATTGCCAAAGGGAAGGAAGTAAAGAGAGTTGGTGGTGCAGCCATGATTATCATGAATGATGAAAGCAATGGCTTCAGTCTCTTTGCTGATGTACATGTTCTACCTGCAACACATGTAAGCTATGATGCTGGACTTAAGATTATAGACTACATAAATTCAACTGAAACACCCACAGCTACCATTTTATTCAAGGGAACTGTAATAGGAAACTCCCTATCTCCGGCCGTTTCATCCTTCTCCTCAAGAGGTCCCAACTTGCCCAGTCCTGGTATTTTGAAACCGGACATCATAGGACCAGGCGTCAACATCCTAGCTGCCTGGCCATTCCCCCTTAACAACAATACTGATTCAAAATCCACTTTCAGCATCCTTTCCGGCACATCAATGTCATGCCCACATCTCAGTGGCGTAGCCGCTTTGCTCAAAAGCTCTCATCCTGACTGGTCACCAGCTGCCATAAAATCTGCCATAATGACTTCTGCAGACATAATGAATTCTGAACACAAACTCATTGTTGACGAAACACTTCAACCTGCCGATATCTTTGCCACAGGTTCTGGCCACGTGAATCCATCAAGAGCAAATGACCCCGGGCTAGTTTATGATATCACGCCAGATGATTATATACCTTATCTATGTGGTTTAGGCTACAGAGATACGGAGGTTGGTATCATTGCACATAAAACAATTATGTGCTCTGGGATTTCAAGCATTCCCGAAGGAGAGCTGAACTATCCCTCATTTTCTGTGGTGCTTGGTTCCCCACAAACATTCACAAGGACTGTAACAAATGTAGGTGAGGCGAACTCGTCTTATGTTGTCCAGGTTACAGCGCCAGAAGGGGTCAATGTGAAGGTCCAGCCAGATAAACTGAACTTTTCAGAAGCAAACCAGAAAGAGGCATATTCAGTGTCATTCAGTCGTATAGAATCAGGCAATGAAACTGCGGAATATGCTCAAGGATTTTTACAATGGGTCTCTGCCAAACACACTGTAAGGAGTCCGATCTTAGTCATCTTTGTGTAA 2223 0.4507 MNAFIFILLTFVLSFHIHFATSSSKTYIVHVKGPQDRTLAELDDLENWYHSFLPPTIMSSEEQPRIIYSYRHVMSGFSARLTEQELREVEKKDGFISARPEMMLHPQTTHTPQVLGLQQQTGLWKESNFGKGVIVGVLDTGIVPDHPSFNDAGMPPPPPRWRGRCEFQVTTCNNKIIGARYFGREVNARKGADAIIDEEGHGTHTASTAAGAFVDNAEVLGNAKGTAAGIAPHAHLAIYKVCLEKDCPEGSVLAALDAAVEDGVDVISISLGLNVSPPFFYDSIAIGTFAAMQKGIFVSCSAGNSGPFSGTLVNGAPWILSVGASNVDRSIVATAKLGNGLEFDGESVFQPSNYTPLLPLAYAGNNGKPEAALCATGSLNYIDFSGKVVLCERGGDTGRIAKGKEVKRVGGAAMIIMNDESNGFSLFADVHVLPATHVSYDAGLKIIDYINSTETPTATILFKGTVIGNSLSPAVSSFSSRGPNLPSPGILKPDIIGPGVNILAAWPFPLNNNTDSKSTFSILSGTSMSCPHLSGVAALLKSSHPDWSPAAIKSAIMTSADIMNSEHKLIVDETLQPADIFATGSGHVNPSRANDPGLVYDITPDDYIPYLCGLGYRDTEVGIIAHKTIMCSGISSIPEGELNYPSFSVVLGSPQTFTRTVTNVGEANSSYVVQVTAPEGVNVKVQPDKLNFSEANQKEAYSVSFSRIESGNETAEYAQGFLQWVSAKHTVRSPILVIFV 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00021 740 FunFam Subtilisin-like protease SBT1.5 132 361 - -
Vium2045g00021 740 Pfam Subtilase family 130 561 IPR000209 GO:0006508|GO:0008236
Vium2045g00021 740 SUPERFAMILY PA domain 369 452 IPR046450 -
Vium2045g00021 740 CDD PA_subtilisin_like 334 460 - -
Vium2045g00021 740 Gene3D - 611 739 - -
Vium2045g00021 740 CDD Peptidases_S8_3 104 561 IPR034197 -
Vium2045g00021 740 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Vium2045g00021 740 PRINTS Subtilisin serine protease family (S8) signature 524 540 IPR015500 -
Vium2045g00021 740 PRINTS Subtilisin serine protease family (S8) signature 197 210 IPR015500 -
Vium2045g00021 740 ProSiteProfiles Serine proteases, subtilase domain profile. 114 594 - -
Vium2045g00021 740 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 135 146 IPR023827 -
Vium2045g00021 740 Pfam Fibronectin type-III domain 641 737 IPR041469 -
Vium2045g00021 740 Pfam Peptidase inhibitor I9 26 100 IPR010259 -
Vium2045g00021 740 Gene3D - 328 468 - -
Vium2045g00021 740 Pfam PA domain 366 446 IPR003137 -
Vium2045g00021 740 Gene3D Peptidase S8/S53 domain 132 607 IPR036852 GO:0004252|GO:0006508
Vium2045g00021 740 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 736 IPR045051 -
Vium2045g00021 740 FunFam subtilisin-like protease SBT1.5 328 467 - -
Vium2045g00021 740 SUPERFAMILY Subtilisin-like 107 598 IPR036852 GO:0004252|GO:0006508
Vium2045g00021 740 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 14 105 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00021 Vium-Chr2045 189238 191460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00021 6 737 Subtilisin-like Serine Gene Family AT1G04110 43.540 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00021 - - gmx:100812208 1224.15