Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00020 ATGGATTCCTTCTTTCTCGTTGCTCTAACCTTTGTCTTGATCTTCCATATTCATTTTGCTCAAGCAAATCAACAACCTTCAACCGCCACCATTTCACAAACATATATTATCCATGTGAAGGGCCCAAAGGGTGCGACACTTGCTCAATCAGAAGATGTAGAGAGCTGGCATAATTCATTCATGCCACCAACTACTATGAGCTCAGAGGATCAACCACGAATGATTTATTCATACCGGAACGTCATCAGTGGCTTTGCTGCAACACTCACTGAACAAGAGCTGAGAGAAGTGGAAAAAAAAGATGGCTTTATCTCTGCTCACCCCGAAAGGATGCTGCATCGTCAAACTACACATACCCCACAATTTTTGGGGTTGGAGCGACAAATGGGACTGTGGAAGGAATCAAACTTTGGAAAGGGAGTAATTGTTGGGGTGCTGGATTCTGGAATCACGCTTAATCATCCTTCATTCAATGATGCAGGAATGCCACCACCACCACCCAAATGGAGAGGGAGATGCGAGCTTAATGGGACAGCATGTAACAATAAACTAATCGGAGCTAGGTCTTTCAACCTCGCTTCAGAGACAACGAAAGAAACAGTGACACCAATTGATGAAGATGGACATGGGACTCACACAGCGAGCACTGCAGCTGGTGCTTTTGTTGATAATGCAGAAGTACTAGGAAATGCCAAAGGTACAGCAGCAGGGATTGCCCCTCATGCTCACCTGGCAATATACAAAGTATGTTTTGGAGAAGACTGCCCAGAAAGCAGTGTATTGGCCGCATTGGATGCAGCTGTGGAGGATGGCGTGGATGTAATATCAATATCCCTTGGTCTAAACGAGCCACCTCCCTTTTTCAATGATAGCACCGCAATAGGCACGTTTGCAGCAATGCAGAAGGGAATCTTTGTAAGTTGTGCAGCAGGGAACTCTGGTCCCGTTCACGGCTCCTTGGTTAATGGCGCGCCTTGGATCCTCACTGTCGGAGCAAGCAATATTGACAGAAGCATTGTAGCAACAGCCAAGCTAGGAAATGGACAAGAATTTGATGGGGAATCTGTTTTCCAGCCTTCCGACTTTTCTCCAACACCGCTGTTCCTAACATATGCTGGAAAGAATGGCAAACAACAAGCTGCCTTATGTGCCAATGGATCCTTGAATGATGTTGATTTTAGAGGCAAAGTTGTTTTGTGTGAGAGAGGAGGGGGGATAGGAAGAATCGCCAAAGGAGAGGAAGTTAAAAGAGCAGGTGGTACAGCCATGATTCTCATGAATGATGAAAGCAATGGCTTCAGTCTCTCAGCTGATGTGCATGTTCTACCAGCAACACATGTAAGCTATGATGCTGGACTTAAGATTAAAGCCTATATAAATTCAACTGAAACACCTACAGCTACCATTTTATTCAAGGGAACTGTAATAGGAAACTCCCTATCTCCGGCCGTTTCATCCTTCTCTTCAAGAGGTCCCAACTTGCCCAGTCCTGGTATTTTGAAACCAGACATCATAGGACCAGGCGTCAACATCCTAGCTGCCTGGCCATTCCCCCTTAACAACAGTACTGATTCAAAATCCACTTTCAACATCATGTCCGGCACATCAATGTCATGCCCACATCTTAGTGGCGTAGCCGCTTTGCTCAAAAGCTCTCATCCTGACTGGTCACCAGCTACCATAAAGTCTGCCATAATGACTTCTGCAGACATAATCAACCATGAAAACAAACTCATTGTTGATGAAACACTTCACACAGCAGATGTCTTTGCCGCAGGTTCTGGCCACGTGAATCCCTCAAGAGCAAATGACCCTGGGTTAGTTTATGATATCACGCCTGATGATTATATACCTTATCTCTGTGGTTTAGGCTACAGCGATACAGAGGTTGGGATCATTGCACATAAAACAATTAAGTGCTCTGAGACTTCAAGCATTCTCGAAGGAGAGCTCAACTATCCCTCGTTTTCCGTGGTGCTTGGTTCCCCAAAAACATTCACAAGGACTGTAACAAATGTAGGTGAGGCCAACTCGTCTTATGTTGTCCATGTTACAGCGCCAGAAGGGGTCAATGTGAAGGTCCAGCCAAATATACTGAACTTTTCAGAAGCAAACCAGAAACAGAAATATTCAGTGTCATTCAGCCGTATAGATTCGGGTAATGAAACTGCGGAATATGCTCAAGGGTTTTTACAATGGGTCTCTGTGAAACACACTGTAAGGAGTCCGATCTTAGTCAACTTTGTGTAA 2250 0.4489 MDSFFLVALTFVLIFHIHFAQANQQPSTATISQTYIIHVKGPKGATLAQSEDVESWHNSFMPPTTMSSEDQPRMIYSYRNVISGFAATLTEQELREVEKKDGFISAHPERMLHRQTTHTPQFLGLERQMGLWKESNFGKGVIVGVLDSGITLNHPSFNDAGMPPPPPKWRGRCELNGTACNNKLIGARSFNLASETTKETVTPIDEDGHGTHTASTAAGAFVDNAEVLGNAKGTAAGIAPHAHLAIYKVCFGEDCPESSVLAALDAAVEDGVDVISISLGLNEPPPFFNDSTAIGTFAAMQKGIFVSCAAGNSGPVHGSLVNGAPWILTVGASNIDRSIVATAKLGNGQEFDGESVFQPSDFSPTPLFLTYAGKNGKQQAALCANGSLNDVDFRGKVVLCERGGGIGRIAKGEEVKRAGGTAMILMNDESNGFSLSADVHVLPATHVSYDAGLKIKAYINSTETPTATILFKGTVIGNSLSPAVSSFSSRGPNLPSPGILKPDIIGPGVNILAAWPFPLNNSTDSKSTFNIMSGTSMSCPHLSGVAALLKSSHPDWSPATIKSAIMTSADIINHENKLIVDETLHTADVFAAGSGHVNPSRANDPGLVYDITPDDYIPYLCGLGYSDTEVGIIAHKTIKCSETSSILEGELNYPSFSVVLGSPKTFTRTVTNVGEANSSYVVHVTAPEGVNVKVQPNILNFSEANQKQKYSVSFSRIDSGNETAEYAQGFLQWVSVKHTVRSPILVNFV 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00020 749 FunFam Subtilisin-like protease SBT1.5 140 379 - -
Vium2045g00020 749 SUPERFAMILY Subtilisin-like 115 607 IPR036852 GO:0004252|GO:0006508
Vium2045g00020 749 Pfam Peptidase inhibitor I9 34 113 IPR010259 -
Vium2045g00020 749 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 143 154 IPR023827 -
Vium2045g00020 749 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 54 745 IPR045051 -
Vium2045g00020 749 Gene3D - 620 748 - -
Vium2045g00020 749 Gene3D Peptidase S8/S53 domain 140 616 IPR036852 GO:0004252|GO:0006508
Vium2045g00020 749 Pfam Subtilase family 138 573 IPR000209 GO:0006508|GO:0008236
Vium2045g00020 749 SUPERFAMILY PA domain 385 462 IPR046450 -
Vium2045g00020 749 CDD PA_subtilisin_like 342 469 - -
Vium2045g00020 749 Gene3D - 336 477 - -
Vium2045g00020 749 PRINTS Subtilisin serine protease family (S8) signature 205 218 IPR015500 -
Vium2045g00020 749 PRINTS Subtilisin serine protease family (S8) signature 533 549 IPR015500 -
Vium2045g00020 749 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Vium2045g00020 749 Pfam Fibronectin type-III domain 650 746 IPR041469 -
Vium2045g00020 749 Pfam PA domain 381 455 IPR003137 -
Vium2045g00020 749 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 114 IPR037045 -
Vium2045g00020 749 ProSiteProfiles Serine proteases, subtilase domain profile. 122 603 - -
Vium2045g00020 749 FunFam subtilisin-like protease SBT1.5 336 476 - -
Vium2045g00020 749 CDD Peptidases_S8_3 112 570 IPR034197 -
Vium2045g00020 749 FunFam Subtilisin-like protease SBT1.5 620 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00020 Vium-Chr2045 182430 185158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00020 11 748 Subtilisin-like Serine Gene Family AT1G04110 44.402 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00020 - - gmx:100785376 1305.04