Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00016 ATGGCTGTCTCTCTTGAAGATCGTAGGTTGTTGTTGATGTTGTTTTCATGGATGTTCATAATGACGGGAAAGCCAGCAACAGTAGCGGGTTTATTTCAGCCCAGTGAGTGGACACAAGCCCATGCCACATTTTACGGTGACGAGAGTGCCTCTGCCACAATGGGAGGAGCGTGTGGATATGGAAATTTGTTGATAAACGGTTACGGGAAAGACACAGCAGCATTGAGCTCTACACTGTTCAACGATGGATTCGCATGTGGGACTTGTTACGAGATAAAGTGTGTCCAATCCAGTGCATGCTTCTCCAATGTGGCTTACACCACAGTGACTGCCACCAATATCTGCCCTCCTAATTGGGCCGAGGCCTCTGATAACGGAGGGTGGTGCAACCCACCACGTGCACATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGAAAGCTGGAATCGTTCCTGTTATGTACCGAAGAGTGGCTTGCGTGAGGAGTGGGGGATTACGATTCTCTTTCCAAGGAAATGGTTATTGGTTACTGGTGTATGTGATGAATGTGGGAGGAGGAGGAGACATTGCAAACATGTGGGTGAAAGGAAGTGGAACTGGGTGGATCACCATGAGCCACAATTGGGGAGCTTCTTACCAAGCATTTGCAACATTGACTGGCCAATCTCTTTCGTTTAAGGCAACTTCTTACACCACCAAAGAGACCATAATAGCTTGGAATGTTGCTCCCACCAACTGGGGCGTAGGATTAACGTATTCCTCCGACGTCAATTTCGGTTGA 792 0.4785 MAVSLEDRRLLLMLFSWMFIMTGKPATVAGLFQPSEWTQAHATFYGDESASATMGGACGYGNLLINGYGKDTAALSSTLFNDGFACGTCYEIKCVQSSACFSNVAYTTVTATNICPPNWAEASDNGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPVMYRRVACVRSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTGWITMSHNWGASYQAFATLTGQSLSFKATSYTTKETIIAWNVAPTNWGVGLTYSSDVNFG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00016 263 PANTHER EXPANSIN-A15 22 258 IPR002963 GO:0009664
Vium2045g00016 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Vium2045g00016 263 Gene3D - 24 163 IPR036908 -
Vium2045g00016 263 Pfam Lytic transglycolase 72 158 IPR009009 -
Vium2045g00016 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Vium2045g00016 263 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Vium2045g00016 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Vium2045g00016 263 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Vium2045g00016 263 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Vium2045g00016 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Vium2045g00016 263 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Vium2045g00016 263 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
Vium2045g00016 263 CDD DPBB_EXPA_N 36 163 - -
Vium2045g00016 263 Gene3D - 169 262 IPR036749 -
Vium2045g00016 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Vium2045g00016 263 SMART dpbb_1 72 158 IPR007112 -
Vium2045g00016 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Vium2045g00016 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Vium2045g00016 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Vium2045g00016 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Vium2045g00016 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Vium2045g00016 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Vium2045g00016 263 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Vium2045g00016 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00016 Vium-Chr2045 165836 167130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00016 28 262 Expansin Gene Family AT1G12560 68.511 2.59e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00016 - - gmx:100781459 489.96