Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00014 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAAACGAGCAGGCAAGTCACCTTCTCCAAGAGAAGGAACGGCTTGCTGAAAAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAGGTCGCACTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACTTCAAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAATCAAAGACCTTGGTGACAGCCACAAAGGAGTCCATGAAAATACGCAGATTCTGAAGGACGGTGATATGAGCATGGCAAAGACGATCGAGCACCTAGAAAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATACATGCAGTCTTGACGAGTTACGACAGCTAGAGAACCAGCTCGAACACAGCTTGGAAAAAATTAGGGCAAGAAAGAATCAATTGTTCATGGAGCGAATTGAGAAGTTAAAAGAAGAGGAAAAGTGCTTACTCCAAGCAAATAAACGCTTACGCGAGCAGTACCTGATTGAAAGAGGGCGTTATTTGAGTGATGAGGATTTGGAAGTGGTGAAAAAGAAGAGGGAAGAAGAGGTGGAGACAGAGTTATTCATAGGAAGACCTGAGAAACAAATGAAGTTAAAGTTGAAAGCAGCAAGCCATGATAGTGCTCATAAATACCTACACATGCAAAATTAA 693 0.4343 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSSINKTVERYQRKIKDLGDSHKGVHENTQILKDGDMSMAKTIEHLENSRRKLLGDELDTCSLDELRQLENQLEHSLEKIRARKNQLFMERIEKLKEEEKCLLQANKRLREQYLIERGRYLSDEDLEVVKKKREEEVETELFIGRPEKQMKLKLKAASHDSAHKYLHMQN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00014 230 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2045g00014 230 Coils Coil 152 172 - -
Vium2045g00014 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium2045g00014 230 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2045g00014 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Vium2045g00014 230 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Vium2045g00014 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium2045g00014 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium2045g00014 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium2045g00014 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium2045g00014 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium2045g00014 230 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vium2045g00014 230 Coils Coil 123 146 - -
Vium2045g00014 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium2045g00014 230 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Vium2045g00014 230 FunFam Agamous-like MADS-box protein AGL13 13 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00014 Vium-Chr2045 138065 154240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00014 1 207 MADS-box Gene Family AT4G22950 59.242 1.20e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2045g00014 K-box 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00014 - - vum:124828919 414.846