Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00013 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAAACGAGCAGGCAAGTCACCTTCTCCAAGAGAAGGAACGGCTTGCTGAAAAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAGGTCGCACTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACTTCAAGATGCTCCAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAATCAAAGACCTTGGTGACAGCCACAAAGGAGTCCATGAAAATACGCAGATTCTGAAGGACGGTGATATGAGCATGGCAAAGACGATCGAGCACCTAGAAAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATACATGCAGTCTTGACGAGTTACGACAGCTAGAGAACCAGCTCGAACACAGCTTGGAAAAAATTAGGGCAAGAAAGAATCAATTGTTCATGGAGCGAATTGAGAAGTTAAAAGAAGAGGAAAAGTGCTTACTCCAAGCAAATAAACGCTTACGCGAGCAGTACCTGATTGAAAGAGGGCGTTATTTGAGTGATGAGGATTTGGAAGTGGTGAAAAAGAAGAGGGAAGAAGAGGTGGAGACAGAGTTATTCATAGGAAGACCTGAGAAACAAATGAAGTTAAAGTTGAAAGCAGCAAGCCATGATAGTGCTCATAAATACCTACACATGCAAAATTAA 702 0.4359 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSRCSSINKTVERYQRKIKDLGDSHKGVHENTQILKDGDMSMAKTIEHLENSRRKLLGDELDTCSLDELRQLENQLEHSLEKIRARKNQLFMERIEKLKEEEKCLLQANKRLREQYLIERGRYLSDEDLEVVKKKREEEVETELFIGRPEKQMKLKLKAASHDSAHKYLHMQN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00013 233 Coils Coil 126 149 - -
Vium2045g00013 233 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vium2045g00013 233 FunFam Agamous-like MADS-box protein AGL13 13 84 - -
Vium2045g00013 233 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Vium2045g00013 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Vium2045g00013 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium2045g00013 233 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Vium2045g00013 233 Pfam K-box region 96 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2045g00013 233 Coils Coil 155 175 - -
Vium2045g00013 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium2045g00013 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium2045g00013 233 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2045g00013 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium2045g00013 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium2045g00013 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium2045g00013 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00013 Vium-Chr2045 138065 154240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00013 1 210 MADS-box Gene Family AT4G22950 58.411 4.21e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2045g00013 K-box 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00013 - - vum:124828919 427.172