Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00012 ATGCAAGAAGCTGGGCTGGCAATGAATATGCTCAGCGCAGAAGTCTCAGCCGCCGCCGCCGACCACCACCACCGTCAACTGAAGGCAGACATAGCCACCCATCCACTTTACGAACAGCTTCTCTCTGCACACGTCTCATGCCTCCGCGTCGCTACACCCATCGACCAGTTGCCACTCATCGACGCTCAGTTATCACACTTCAACAATCTCCTCCGCTCTTACGCCTCACACCATTCCCATTCCCATTCCCATGATCGACAAGAGCTCGACAACTTCATGACACAGTATTTGATCGTGTTATGTGCGTTAAAAGAGCAGCTTCAGCAACATGTTCGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGCACCTTGCAAGCTCTGACAGGAGTGAGCCTGGGAGAAGGATCGGGTGCAACAATGTCAGATGACGAAGAGGACTTTCAAATGGATGGGTCTTTAGATCAGTCTAGCGCTGAGGGGCAGGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAGGAGCTCAAAATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATCGAAGATGTTAGGGAGGAAATATTAAGGAAAAGGAGGGCCGGGAAATTGCCTGGGGACACAACATCGGTTTTAAAGGCATGGTGGCAGCAACACGCTAAATGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCTGTCACCTCTCTCAAGTCCAAGCGCAAGAGGGAGTATTCCCACTAA 876 0.5 MQEAGLAMNMLSAEVSAAAADHHHRQLKADIATHPLYEQLLSAHVSCLRVATPIDQLPLIDAQLSHFNNLLRSYASHHSHSHSHDRQELDNFMTQYLIVLCALKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGSGATMSDDEEDFQMDGSLDQSSAEGQDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYSH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00012 291 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Vium2045g00012 291 FunFam homeobox protein knotted-1-like 3 isoform X1 211 272 - -
Vium2045g00012 291 SUPERFAMILY Homeodomain-like 212 277 IPR009057 -
Vium2045g00012 291 Pfam KNOX1 domain 27 67 IPR005540 GO:0003677|GO:0005634
Vium2045g00012 291 Gene3D - 209 284 - -
Vium2045g00012 291 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Vium2045g00012 291 SMART KNOX2_2 79 134 IPR005541 GO:0003677|GO:0005634
Vium2045g00012 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 275 - -
Vium2045g00012 291 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Vium2045g00012 291 SMART HOX_1 212 277 IPR001356 GO:0003677
Vium2045g00012 291 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Vium2045g00012 291 CDD homeodomain 213 274 IPR001356 GO:0003677
Vium2045g00012 291 Pfam KNOX2 domain 83 133 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00012 Vium-Chr2045 107766 117281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00012 1 286 Homeobox Transcription Factor Family AT1G62990 74.914 7.41e-161 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium2045g00012 KNOX2 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00012 - - gmx:100803130 519.235