Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00010 ATGGCGTCCAATCAGGAGGAGCAGGACATGGATCAAGACCAAGATGGAGGAACAACGGACCTCAGCACCAGCGATGTCGACGCAGACAAAGCCTTATCCCAAAGCACCAACCTCAATGGATTTCAACAACACTTCCAAGACAAAGCCATAGCCTTCCAAGCCTTGCCGCTCAAAAACGAGCCAACGGATTCCGACCCTGACCCGGACCCCAACGCGCCCAATCCTCCTCCACCGCTGCCGACGATGCAGCTTCAGCTCAAATCGCCCAGGCGCTCCTCCACCAAGGACCGCCACACCAAAGTCGAAGGCCGAGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAACTGACCCGAGAGCTGGGCCACAAATCCGACGGCGAAACCGTCCGGTGGCTCCTCGAGCACTCCGAGCAGGCCATCATAGAAGCCACCGGCACAGGCACGGTGCCAGCCATCGCGGTCTCTGTCGGCGGCGCGCTCAAAATCCCAACGACCTCGAGCGCCAACCAAAACAGGGGCGAAGAAGGCGCGTCTAACAAGAAACGGAAACGCCCTTCTAACAGCGAGTTCGTGGACATAAACGATACCGTTTCGCAGACGTCCGGTCTGGCCCCGGTTCAAGTACCCCAAGGACTGGTCCCGGTCTGGGCCGTTAGTAACCCCAGCATGGTTGTCCCCGCCAACACGTTCTGGATGATCCCGCAGGCCGCGACCACCAGGAACCCCTTGGGCGGAGTTACGGGCCCCTCCAGCCACCAGCCTCAGATATGGGCCTTATCTCCCTCCGTGTTGAACGTGGCGGCCAGGCCCATAACGCCTGTCGTGACAACAACGAATATTCCAGAAGCTTGGTCCGTCATGACGGCCTGCTGTAACGGTTCAAACTCAGCAGCGGTGAGTACGAGCACTGTGGGAGCTAGGTCGTCTACCAATTCCAGCATGGCCCCTAGCGTTCCTTCCAGCGCCACCAAGACTCAGACGCTGAGGGATTTTTCCCTCCAAATTTACGACAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGCCCAAACGCCAACCCATGA 1077 0.5933 MASNQEEQDMDQDQDGGTTDLSTSDVDADKALSQSTNLNGFQQHFQDKAIAFQALPLKNEPTDSDPDPDPNAPNPPPPLPTMQLQLKSPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVSVGGALKIPTTSSANQNRGEEGASNKKRKRPSNSEFVDINDTVSQTSGLAPVQVPQGLVPVWAVSNPSMVVPANTFWMIPQAATTRNPLGGVTGPSSHQPQIWALSPSVLNVAARPITPVVTTTNIPEAWSVMTACCNGSNSAAVSTSTVGARSSTNSSMAPSVPSSATKTQTLRDFSLQIYDKQELQFLGRSGPNANP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00010 358 MobiDBLite consensus disorder prediction 180 194 - -
Vium2045g00010 358 MobiDBLite consensus disorder prediction 66 83 - -
Vium2045g00010 358 MobiDBLite consensus disorder prediction 15 46 - -
Vium2045g00010 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 58 344 IPR005333 GO:0003700
Vium2045g00010 358 MobiDBLite consensus disorder prediction 168 195 - -
Vium2045g00010 358 ProSiteProfiles TCP domain profile. 94 148 IPR017887 -
Vium2045g00010 358 MobiDBLite consensus disorder prediction 90 105 - -
Vium2045g00010 358 MobiDBLite consensus disorder prediction 1 105 - -
Vium2045g00010 358 Pfam TCP family transcription factor 93 186 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00010 Vium-Chr2045 80344 81774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00010 73 349 TCP Transcription Factor Family AT2G45680 46.688 8.12e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium2045g00010 TCP 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00010 - - gmx:100797827 430.254