Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2045g00007 ATGGCGACAGCGGCGGAGCCAGAAGCGAAGACCTACTGGTGCCACGAATGCAATATGAGTGTGTCCCTCACGCTCCTTCCCTCGCCTCTCCTCTGTCTCCACTGCCACACTTTCTTCCTCGAACTAATGGCCTCTCCCTTCTCCCAAAACAATGTCGAATCACCCTTCTTTGGCGTCGTTTTCCACGACGCGCTCTTACTCCTCTCCCCCAAGCCCCTCCCCGCCAAACCCTGCCCTCTCCCCTTCGTCAACGTCACACCCTCGCTCCTTTCTGCGCTCGACCCCAATGGCGTCGTTTTCTGCGCTGTGTGCAAAGACCAAATTTCCCTCTTTGACGTCGAGGCCAAACAGTTGCCCTGCAAACACCTCTACCATGCCGGTTGCATCACGCCGTGGCTCGACCTCCACGCGTCGTGCCCGTTGTGCAAGCTCCGCCTTGAGGAAGAGGCGACATAG 456 0.5833 MATAAEPEAKTYWCHECNMSVSLTLLPSPLLCLHCHTFFLELMASPFSQNNVESPFFGVVFHDALLLLSPKPLPAKPCPLPFVNVTPSLLSALDPNGVVFCAVCKDQISLFDVEAKQLPCKHLYHAGCITPWLDLHASCPLCKLRLEEEAT 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2045g00007 151 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vium2045g00007 151 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Vium2045g00007 151 SMART ring_2 101 142 IPR001841 -
Vium2045g00007 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 143 - -
Vium2045g00007 151 Pfam Ring finger domain 101 143 IPR001841 -
Vium2045g00007 151 SUPERFAMILY RING/U-box 100 146 - -
Vium2045g00007 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2045g00007 Vium-Chr2045 55030 55485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2045g00007 5 146 C3H Transcription Factor Family AT3G60080 31.683 6.16e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2045g00007 K11982 - gmx:100775530 202.216