Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2043g00002 ATGCGGCATTCCATGGAAGAGAACCCTAACCTCTCTCTCACTCACGATTCTTCCCTTTCCTCTCCGGAATTCTTCAAACAAGTCCAAGCTGCTCTCAAGCGCCATCGCCCTCTCGCCGTTAATGCCTCTTCAGCTTCAACCCAATCCCATACCCTGAGGCCAAAGCGCTCCATGGTGGCGCACCGAAACGTCGCAAACAGGTCCGAAGGGGAACCTCCGTCCATTTCGGACACGTTCACCGGTGAAGGTTGTAAGAACGAACCCTCTCTGCCCGTGGAATCTCATAGTGTTGGTGCGCACAAGAAGGTTCGTTTTTCAACCGAGAGCAACAATGCCACTTCACAGCCGCAGGATAGGGCATCAATTGGATTCAATCAACATGTGAAACACCACAATATGCAGCAGGCAGAGTCTGAGACTAGTTTGTTATCTGAGGGAGGCAAGAGTTCTCTGCTTCCAAGGAGAAGAATAGTTACTGAGGATCATCTCCAGCAATTCAAAAACTTTTTGAGTCAACCAGCTACACTATCTTCCGTAGTGGGATTGCCATGCCCTACAACTACATCAGTCCATTTAACTTCAGCTCCAATGCCGAATTCTATAACTCATTGTGCCAATTCCTATATGGATAGTGACTCGCATGTGGCTGCAGAACCTTATGATAACCTGAATGTCAATCCTCATCCTATAACACAAAGGGCTGTTAAATCACCATATGATTCTCTGAAAGACACCAATAGAATGTCAATTGATCAAGTGGCAAGTGCAGTTCAAGAATATAATTCACTAAATGAGGCAGAGATGACATTTAAGCACAGTGACCCATCTAAGGAGCAACAAGGATGTTTGCTAAAGGAAACTAGTAAATATACTTCTTGTTGTAATGACATGTTAAGTAACACGGACAAGCCTGCAGCTGTTACCAACATACTGCCTCAGGGTCTGACTTCATCTTCAGATACAAAGCTGGAATCTTCTAGGTTAGAAAAGCAAGAAAAAAATGCAAGTTGTAAAGGACCTTCAGTCGCTCGAAAGAGGACCTATGACCCTGAGTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGAAGTGGTGGAAGCAGTGAGGTGCACAAAGTGATTTCATCAGACTGTACTATCTATGCACTTAAAAGAATAAAACTAAAGGGTCGTGATTATGCCACAGCATACAGCTTTTGTCAGGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATGAATGGCTCCTCCAGTAGTAAAGATGGTAGAGTCAAGGATGATGGATACATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTAGATGGGAACAACCAGACTATAGATGCGAATTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAGGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCATTAAAACTGATTGATTTCGGTATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGTGATTCACAGGTATTTCATTCTTGTACCATGGTTATCAATCTCAGTTTGCAGCTTGTAGGAGGAACCAGGATGACTGCAGTTTTAAATATAGTAGCACAAGTAATTTGTACTACACCCATCAATCTAGGAACAATAAGGTTATTGTATTGA 1785 0.4241 MRHSMEENPNLSLTHDSSLSSPEFFKQVQAALKRHRPLAVNASSASTQSHTLRPKRSMVAHRNVANRSEGEPPSISDTFTGEGCKNEPSLPVESHSVGAHKKVRFSTESNNATSQPQDRASIGFNQHVKHHNMQQAESETSLLSEGGKSSLLPRRRIVTEDHLQQFKNFLSQPATLSSVVGLPCPTTTSVHLTSAPMPNSITHCANSYMDSDSHVAAEPYDNLNVNPHPITQRAVKSPYDSLKDTNRMSIDQVASAVQEYNSLNEAEMTFKHSDPSKEQQGCLLKETSKYTSCCNDMLSNTDKPAAVTNILPQGLTSSSDTKLESSRLEKQEKNASCKGPSVARKRTYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKRIKLKGRDYATAYSFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVMNGSSSSKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGNNQTIDANWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVFHSCTMVINLSLQLVGGTRMTAVLNIVAQVICTTPINLGTIRLLY 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2043g00002 594 MobiDBLite consensus disorder prediction 129 147 - -
Vium2043g00002 594 MobiDBLite consensus disorder prediction 129 148 - -
Vium2043g00002 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Vium2043g00002 594 ProSiteProfiles Protein kinase domain profile. 361 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2043g00002 594 Gene3D Phosphorylase Kinase; domain 1 354 440 - -
Vium2043g00002 594 Gene3D Transferase(Phosphotransferase) domain 1 447 568 - -
Vium2043g00002 594 Pfam Protein kinase domain 361 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2043g00002 594 MobiDBLite consensus disorder prediction 40 54 - -
Vium2043g00002 594 SUPERFAMILY Protein kinase-like (PK-like) 355 540 IPR011009 -
Vium2043g00002 594 MobiDBLite consensus disorder prediction 69 83 - -
Vium2043g00002 594 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vium2043g00002 594 SMART serkin_6 361 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2043g00002 594 FunFam serine/threonine-protein kinase mph1 isoform X2 354 441 - -
Vium2043g00002 594 MobiDBLite consensus disorder prediction 37 98 - -
Vium2043g00002 594 MobiDBLite consensus disorder prediction 316 341 - -
Vium2043g00002 594 PANTHER MIXED LINEAGE PROTEIN KINASE 39 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2043g00002 Vium-Chr2043 333 6476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2043g00002 361 536 Core Cell Cycle Gene Families AT3G48750 30.387 2.30e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vium2043g00002 Pkinase 3.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2043g00002 K08866 - gmx:100816674 849.736