Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2043g00001 ATGCGGCATTCCATGGAAGAGAACCCTAACCTCTCTCTCACTCACGATTCTTCCCTTTCCTCTCCGGAATTCTTCAAACAAGTCCAAGCTGCTCTCAAGCGCCATCGCCCTCTCGCCGTTAATGCCTCTTCAGCTTCAACCCAATCCCATACCCTGAGGCCAAAGCGCTCCATGGTGGCGCACCGAAACGTCGCAAACAGGTCCGAAGGGGAACCTCCGTCCATTTCGGACACGTTCACCGGTGAAGGTTGTAAGAACGAACCCTCTCTGCCCGTGGAATCTCATAGTGTTGGTGCGCACAAGAAGGTTCGTTTTTCAACCGAGAGCAACAATGCCACTTCACAGCCGCAGGATAGGGCATCAATTGGATTCAATCAACATGTGAAACACCACAATATGCAGCAGGCAGAGTCTGAGACTAGTTTGTTATCTGAGGGAGGCAAGAGTTCTCTGCTTCCAAGGAGAAGAATAGTTACTGAGGATCATCTCCAGCAATTCAAAAACTTTTTGAGTCAACCAGCTACACTATCTTCCGTAGTGGGATTGCCATGCCCTACAACTACATCAGTCCATTTAACTTCAGCTCCAATGCCGAATTCTATAACTCATTGTGCCAATTCCTATATGGATAGTGACTCGCATGTGGCTGCAGAACCTTATGATAACCTGAATGTCAATCCTCATCCTATAACACAAAGGGCTGTTAAATCACCATATGATTCTCTGAAAGACACCAATAGAATGTCAATTGATCAAGTGGCAAGTGCAGTTCAAGAATATAATTCACTAAATGAGGCAGAGATGACATTTAAGCACAGTGACCCATCTAAGGAGCAACAAGGATGTTTGCTAAAGGAAACTAGTAAATATACTTCTTGTTGTAATGACATGTTAAGTAACACGGACAAGCCTGCAGCTGTTACCAACATACTGCCTCAGGGTCTGACTTCATCTTCAGATACAAAGCTGGAATCTTCTAGGTTAGAAAAGCAAGAAAAAAATGCAAGTTGTAAAGGACCTTCAGTCGCTCGAAAGAGGACCTATGACCCTGAGTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGAAGTGGTGGAAGCAGTGAGGTGCACAAAGTGATTTCATCAGACTGTACTATCTATGCACTTAAAAGAATAAAACTAAAGGGTCGTGATTATGCCACAGCATACAGCTTTTGTCAGGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATGAATGGCTCCTCCAGTAGTAAAGATGGTAGAGTCAAGGATGATGGATACATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTAGATGGGAACAACCAGACTATAGATGCGAATTGGCTTCGGTTTTATTGGCAGGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCATTAAAACTGATTGATTTCGGTATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGTGATTCACAGGTATTTCATTCTTGTACCATGGTTATCAATCTCAGTTTGCAGCTTGTAGGAGGAACCAGGATGACTGCAGTTTTAAATATAGTAGCACAAGTAATTTGTACTACACCCATCAATCTAGGAACAATAAGGTTATTGTATTGA 1773 0.4247 MRHSMEENPNLSLTHDSSLSSPEFFKQVQAALKRHRPLAVNASSASTQSHTLRPKRSMVAHRNVANRSEGEPPSISDTFTGEGCKNEPSLPVESHSVGAHKKVRFSTESNNATSQPQDRASIGFNQHVKHHNMQQAESETSLLSEGGKSSLLPRRRIVTEDHLQQFKNFLSQPATLSSVVGLPCPTTTSVHLTSAPMPNSITHCANSYMDSDSHVAAEPYDNLNVNPHPITQRAVKSPYDSLKDTNRMSIDQVASAVQEYNSLNEAEMTFKHSDPSKEQQGCLLKETSKYTSCCNDMLSNTDKPAAVTNILPQGLTSSSDTKLESSRLEKQEKNASCKGPSVARKRTYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKRIKLKGRDYATAYSFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVMNGSSSSKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGNNQTIDANWLRFYWQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVFHSCTMVINLSLQLVGGTRMTAVLNIVAQVICTTPINLGTIRLLY 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2043g00001 590 MobiDBLite consensus disorder prediction 129 147 - -
Vium2043g00001 590 Gene3D Phosphorylase Kinase; domain 1 354 440 - -
Vium2043g00001 590 MobiDBLite consensus disorder prediction 129 148 - -
Vium2043g00001 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Vium2043g00001 590 PANTHER MIXED LINEAGE PROTEIN KINASE 39 545 - -
Vium2043g00001 590 SMART serkin_6 361 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2043g00001 590 MobiDBLite consensus disorder prediction 40 54 - -
Vium2043g00001 590 MobiDBLite consensus disorder prediction 69 83 - -
Vium2043g00001 590 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vium2043g00001 590 Gene3D Transferase(Phosphotransferase) domain 1 447 564 - -
Vium2043g00001 590 ProSiteProfiles Protein kinase domain profile. 361 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2043g00001 590 FunFam serine/threonine-protein kinase mph1 isoform X2 354 441 - -
Vium2043g00001 590 Pfam Protein kinase domain 361 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2043g00001 590 MobiDBLite consensus disorder prediction 37 98 - -
Vium2043g00001 590 MobiDBLite consensus disorder prediction 316 341 - -
Vium2043g00001 590 SUPERFAMILY Protein kinase-like (PK-like) 346 537 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2043g00001 Vium-Chr2043 332 6476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2043g00001 350 533 Core Cell Cycle Gene Families AT4G28980 28.796 2.83e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vium2043g00001 Pkinase 4.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2043g00001 K08866 - gmx:100816674 837.025