Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2040g00001 ATGCGCAACATTCAGATTGAAACGAAGCAAAACGGTGATGTGAAGTACTCGTATGAGTCATATCCTCAATCTCCTTTCTCAGCTTATCAAGCTCCAAACGATGGTAACACTACCAACGAGCAAGAATCAACAACGCCGTCATCTCTCAGCAGAATCAGTCCACTCATTTTACTGGTCATAATTATTCTAGCAGTTATCTTCTTCGTGTATGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACACCAACCTCTTCATCAATCTACAACTCCAACAGGTTCCACGAATCCATGCGCTCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGCTTGCACGATTCAGGTATAGACCAAGCCCTCATAGACGCTCTACCAGTTTTCCATTACCAAGACTTGCTGGGTTCAAAGGAACCGTTTGATTGTGCCGTGTGTTTATGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACACACGCCTTTCACATGACCTGTCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTCTCGAACTACGTGGAGAATCAAAATGAAAATGAAAATGAAAATGAAAATCCTATTTTGTTTAATGTTGGTATTGGGAATTCAAATTCCTTGGTTGTGCCAAGTGGGGTGAGAGGTGAGGAAGAGAACGGGTTTTCAGAGAGTGAAAGATCAGTTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAACAATGGGATGGAGTTAGGGAATGGAGATAGTTGTAGCTTGAATGAGAGAAGATGCTACTCCATGGGTTCATATAGGTATGTGGTTCGTGATTCCAATCTGCAAGTGGTTTTATCTGAATCTGGTGATGTTTCAGAAAATGAGAATGTGAAGGGAAAGAGGATAAGCGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACCATACATTTCATGCTTCTAATGCACCTTTCCCTTAA 1020 0.4324 MRNIQIETKQNGDVKYSYESYPQSPFSAYQAPNDGNTTNEQESTTPSSLSRISPLILLVIIILAVIFFVYGLVHLVLWFFMKTPTSSSIYNSNRFHESMRSRVLQRQLQQLFRLHDSGIDQALIDALPVFHYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMTCLDTWLLSNSTCPLCRASLSNYVENQNENENENENPILFNVGIGNSNSLVVPSGVRGEEENGFSESERSVGKRVFSVRLGKFRNNGMELGNGDSCSLNERRCYSMGSYRYVVRDSNLQVVLSESGDVSENENVKGKRISDSTKGESFSVSKIWLWSKNHTFHASNAPFP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2040g00001 339 Pfam Ring finger domain 143 186 IPR001841 -
Vium2040g00001 339 SUPERFAMILY RING/U-box 123 198 - -
Vium2040g00001 339 FunFam RING-H2 finger protein ATL46 106 191 - -
Vium2040g00001 339 SMART ring_2 144 185 IPR001841 -
Vium2040g00001 339 CDD RING-H2_EL5-like 143 186 - -
Vium2040g00001 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 323 - -
Vium2040g00001 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 197 IPR013083 -
Vium2040g00001 339 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2040g00001 Vium-Chr2040 3840 5247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2040g00001 50 336 C3H Transcription Factor Family AT2G18650 40.541 1.02e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2040g00001 - - gmx:100807741 451.825