Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2035g00003 ATGAGGTCCAACGCAGTCATCTTCTTCCTTCTCCACCTCTTCTCACACCTCCAAGCGTACACCCTAGTGGACAATTTCACCATCAGTTGCGGTTCCTCCGGAACATCCTACGACGGCCAAAGGACATGGACCGGGGACATAGGTTCACCGCTCTTAACAAACGAATACGACACCGTTTCAGCCAAAGCCACAACGCAATCTCCTTCGATCAACCAAGTTCCCTATGCCACAGCTCGCCTTTCTCATTCCGAATTCAGTTACTCCTTCTATTTCTCAACCGGAGGTCCAAAATTTCTTCGCCTCTTCTTCTTTCCAGCTTCTTATCCTTCATATTCACGCACCCAGGCATTCTTCTCTGTTCACTCCAATCAATTCATTCTCCTCCAAGATTTCAACGCCTCTCTCAACGCCGACGCTCAAGCCATCGACACTATCTTCAGAGAATACGTCGTCAACGTCAAAGACGGTGAGAGTCTTATCCTTACCTTCACCCCCTCCCATCCAAACTCCTACGCTTTCATCAATGGAATCGAGGTGCTTTCCATGCCAACCGATTTATATTACACTCCACTAGATGACCCAGGATTCACTCTCGTGGGACATGATACGCTATTCAGCGTCGGAAGTAGCACTGCCATGGAAACAGTGTATCGTATTAAAACCGGGGGCCAGGAAATCTCTCCAAAAAACGACACCGGTTTGTTCAGGAATTGGGCTGACGAGAAAAGTTATTTTATCAAACACAGTCCAAGGAATGATGATCTACCAGCTGACATGGATGGGAAAATGAATATAACCGTGAATCCCGATTACTTGGCACCAAAGGAACTGTTCAGAACAGCGCGTATCATGGGCACAAACGCCACTCTGAACAGAATGAGCAACCTCACTTGGGAGTTCCCCGTTGATTATGGCTTCACTTACGTTCTCAGGCTCCACTTTTGCGAGCTTGATCCCAATATTAATAACATCGGTGACAGGCGATTCTCCATTTACATAGGGAGTCAGTTGGCTGATTCGCGTGCAGATGTAATGGTTTGGAGTCAGAAACAAAAAGGTCTAGCTGTGCAGAAAAACTATGCCTTTTTGATTCCCGAGAATAGTGTTCAGAAAAAGTATAATCTCTCGCTTCAAATGCACCCTTACGGAAGCAGTGTGTATTCGAGATACTCAGATGCCTTCCTGAACGGTCTAGAGATTTTCAAAATCAGCGACACTAGGTCTAACAACCTCGCCGGACCTAACCCGGAGCCGATTGAGACATCACATCAAAAGGAAAATAGAAGAAGCAGAAGCAAAAACCTGATAATTGGTAACACGGTGAAGGTAGTTTCCGGTGTCGTTTTCATCTTGCTTGTCCTTTTCTTTATCCGGTTGTTGACAACTTCCAAGTGGAGTGCACCGTTGTTCTTAACGACCAAGTCAACCAAGCGACACAATTTTTCTCTGCCTTCTGGTCAATGCCGCCGATTTTCTCTAGTCGAGATCAAAGCCGCCACCAAAAACTTCAATAACGTCCTTATCGTCGGCGACGGAGGATTTGGACACGTATATAAGGGCTACATCGACGACGGCTCAGTGCCCGTCGCTATCAAGCGCCTTAGACAGGGTTCCCAGCAGGGGGCTAGCGAGTTCGTTAACGAGATCCAGATGCTCTCGCAACTCCGCCACCGCCATCTCCTCTCACTCATCGGTTACTGCTGCGATAACAATGAGATGATCCTCGTTTACGAGTTCATGAGACGTGGAAACCTCCGTGAACATCTCTACGGCACCGATAACCCCCCTCTCTCGTGGAAGCAGCGGTTGAAGATTTGCGTTGGCGCTGCGCGCGGACTACGCTATCTTCACACTGGCGCGAACCACATGATCATCCACCGTGACGTGAAAACGACGAACATCTTGTTGGATGAGAAATGGGTGGCGAAGGTTTCGGATTTCGGGCTGTCCAAAATTGGGCCGAATGAGATGTCGAAGTCCCATGTGAGCACCGTCGTAAAAGGCAGCTTTGGGTATTTGGATCCGGAATATTACATTCGACGGCGGCTGACGGAGAAATCTGACGTGTATTCTTTTGGGGTGGTGTTGTTTGAGGTACTCTGTGCCCGTTCTCCTCTGATTCATACTGAAGAAATCGAACAGGTGTCACTAGCCAATTGGGCCAGATATTGTTGCCAAAATGGGACAGTGACGGAGATTGTGGACCCCATATTGAAAGGGAAGATCGCTCCCGATTGTTTGGCCAAGTTTTGTGAGATTGGGGTGAGTTGTTTATCACAAGAGGGGATGCAGAGGCCTTCCATGAACGATGTCGTTTTGATGTTAGAGTCTGCACTGAAACTGCAAGAGAGTGCCGACCAAGGCGCAACACAGGAAGCCATTGACCATGTGCTTGATCTTGGAGAGCACCACAATAGTTGCAAGGATAATGATAAGTTGATGTTGGATCTTTTTTCTGAGATTGTCGACCTAGAGCCACGTTGA 2484 0.4787 MRSNAVIFFLLHLFSHLQAYTLVDNFTISCGSSGTSYDGQRTWTGDIGSPLLTNEYDTVSAKATTQSPSINQVPYATARLSHSEFSYSFYFSTGGPKFLRLFFFPASYPSYSRTQAFFSVHSNQFILLQDFNASLNADAQAIDTIFREYVVNVKDGESLILTFTPSHPNSYAFINGIEVLSMPTDLYYTPLDDPGFTLVGHDTLFSVGSSTAMETVYRIKTGGQEISPKNDTGLFRNWADEKSYFIKHSPRNDDLPADMDGKMNITVNPDYLAPKELFRTARIMGTNATLNRMSNLTWEFPVDYGFTYVLRLHFCELDPNINNIGDRRFSIYIGSQLADSRADVMVWSQKQKGLAVQKNYAFLIPENSVQKKYNLSLQMHPYGSSVYSRYSDAFLNGLEIFKISDTRSNNLAGPNPEPIETSHQKENRRSRSKNLIIGNTVKVVSGVVFILLVLFFIRLLTTSKWSAPLFLTTKSTKRHNFSLPSGQCRRFSLVEIKAATKNFNNVLIVGDGGFGHVYKGYIDDGSVPVAIKRLRQGSQQGASEFVNEIQMLSQLRHRHLLSLIGYCCDNNEMILVYEFMRRGNLREHLYGTDNPPLSWKQRLKICVGAARGLRYLHTGANHMIIHRDVKTTNILLDEKWVAKVSDFGLSKIGPNEMSKSHVSTVVKGSFGYLDPEYYIRRRLTEKSDVYSFGVVLFEVLCARSPLIHTEEIEQVSLANWARYCCQNGTVTEIVDPILKGKIAPDCLAKFCEIGVSCLSQEGMQRPSMNDVVLMLESALKLQESADQGATQEAIDHVLDLGEHHNSCKDNDKLMLDLFSEIVDLEPR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2035g00003 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vium2035g00003 827 Gene3D Transferase(Phosphotransferase) domain 1 580 801 - -
Vium2035g00003 827 PANTHER OS03G0124300 PROTEIN-RELATED 7 463 IPR046957 GO:0004672
Vium2035g00003 827 Gene3D - 211 404 - -
Vium2035g00003 827 Gene3D - 25 183 - -
Vium2035g00003 827 SMART serkin_6 503 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2035g00003 827 FunFam FERONIA receptor-like kinase 25 183 - -
Vium2035g00003 827 CDD STKc_IRAK 509 776 - -
Vium2035g00003 827 Pfam Malectin-like domain 28 403 IPR024788 -
Vium2035g00003 827 MobiDBLite consensus disorder prediction 409 430 - -
Vium2035g00003 827 ProSitePatterns Protein kinases ATP-binding region signature. 509 532 IPR017441 GO:0005524
Vium2035g00003 827 FunFam FERONIA receptor-like kinase 211 404 - -
Vium2035g00003 827 Pfam Protein tyrosine and serine/threonine kinase 509 773 IPR001245 GO:0004672|GO:0006468
Vium2035g00003 827 FunFam receptor-like protein kinase FERONIA 469 579 - -
Vium2035g00003 827 ProSiteProfiles Protein kinase domain profile. 503 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2035g00003 827 FunFam Receptor-like protein kinase FERONIA 580 796 - -
Vium2035g00003 827 SUPERFAMILY Protein kinase-like (PK-like) 478 775 IPR011009 -
Vium2035g00003 827 Gene3D Phosphorylase Kinase; domain 1 472 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2035g00003 Vium-Chr2035 40128 42861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2035g00003 20 812 Receptor kinase-like Gene Family AT3G51550 47.356 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2035g00003 Malectin_like 1.1e-35 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2035g00003 - - vra:106770147 1231.08