Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2035g00002 ATGGCTATCACCACCTCCTTAAAACTCTTTTTCCTCCTACTACACTTCTCCACACGCCTCCAAGCCTACACCTCAGAGGAAGTATTTACCATCAATTGCGGCACAACCGGAAAGTCCTCTGATGGTCAAAGAACGTGGACCGGTGACGAAGACACAAAGTACTTAACTTTCCAAGACACCACCGTTTCAGACAAGGCGATAACACAGTCTCCTTCAGCCAATCAAGTCCCCTTCTCCACTGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCTCCAAATTCCTTCGCCTCTTCTTCTATCCTGCTGACTACTCCTTCTTTCCCCGCACTCAAGCATCTTTCCACGTTCAATCCAATCAATTCACTCTCCTCAACGCTTTCAACGCCTCTCTTAACACCGACGCTCAAGCCACCGACACTGTTTTCAGAGAATACGTCGTCAACGTCAACGACGGTGAGAGGCTTATCCTCACCTTCACTCCCTCGCACCCAAACTCCTACGCTTTCATCAATGGAATCGAGGTGCTTTCCATGCCAACCGATTTATATTACACACCAGAAAATGACACAGGCTTCACGAACATCGGGATTAGCACCCTGTACAGTGTTGGAACCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAGCCGGAGGACAAGAAATCTTGCCATATAACGACAGCGGTTTGTTCAGGGATTGGGCTGCCGAAGAACGTTACTTTATCAAATACAATCCAGAGAATGATGATCTACTAGCTGACATGGATGGGAAAATGAACATAACCGTGAATCCCGATTACGTGGCACCAAAGGAACTTTTCAGAACAGCGCGTAGCATGGGCAGATACGCCACTCTGAACAGAATGAGCAACCTCACTTGGGAGTTCCCCGTTGATTGTGGCTTCACTTACGTTCTCAGACTCCACTTCTGCGAGCTTGATCCCTATATTAATGACATCGGTGACAGGCAGTTCTATATTTACATAGCGAGCCAGTTGGCTGAAGTACGTGCAGATGTAATGAAATGGAGTCAGAAACAAAAAGGTCTAGTTGTGCATAAAAATTATGCCGTTTTTATTCCCCAGAATGGTTCTCAGAAAAAGTTTAATCTCTCTCTTCAAATGCAGCCTGACGGAAGCAACGTGGATTCTAAATACGCAAACGCCTTACTTAACGGTCTCGAGATCTTCAAAATCAGCAACTCAAACAACCTAGCTGGTCCAAACCCAGATCCGGTTCAGACTCCACAGAACAACATTCCAGGCCAAAACGGAAAGACCATAGCAGGGGTGCTGTCTGGCGTCGTTTTGATCTTGATAATCGTTTTCCTTGTAGTGTTTTTACGATACAAGAGAAACACTTATACTAAGAGCAGGGATTGCGAATCCAAGTCAACGACCATCTTCCTGCCGACAGATCTCTGCCGCCGCTTCTCCTTCGCCGAGATGAGAGCGGCCACCCAAAACTTCGACGAAGTCTTGATCGTCGGCACCGGGGGATTCGGCCAAGTGTACAAGGGCTATATCGACGAGGGCTCCGTTCCCGTAGCCATCAAGCGCCTTAAACCGGATTCGCAGCAAGGGGCTCGCGAGTTTCTGAACGAAATTAAGATGCTCTCACAACTTCGCCACCTCAATGTCGTGTCCCTCATCGGCTACTGCAACGATAATAAGGAAATGATCTTGGTCTACGATTTCATAACACGTGGCAACCTCCGTGACCATCTATACAACACGGATAACCCAGCTATATCGTGGAAGCAGCGGTTGCAGATCTGCATCGGCGCGGCGCGTGGACTTCATTATCTTCACACAGGCGCGAAGCACACGATCATTCACCGGGACGTGAAAAGCACGAACATCCTGTTGGACGATAACCTCTCACCACAAACCATGGCTATCTTAACACTCTTCTTTTTTCTTCTACCCTTCTCCACACACCTCCAAGCCTACATCCCAGAGGAAGTTTTCACCATCAATTGCGGCACCACCGGGAACTCCTCCGACGGTCAAAGAACGTGGACCGGCGACGCAGACACAAAGTACTTATCTTCCCAAGATATCACCGTTTCAGACAAGGCCCCAACACAGTCTCCTTCCGCCAATCAAGTCCCCTTCTCCACTGCACGCTTGTCAAGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCACCAAATTCATTCGCCTCTTCTTCTACCCTGCTGACTACCCTTCCTTTCCCCGCACCCACGCATCCTTCTCCGTTCTATCCAACCAATTTACTCTCCTCAACGATTTCAACGCCTCTCTTAACGCCGACGCTCAAGTCATGGACACTATCTTCAAGGAATACGTGGTCAACGTCAACGATGGTGAGAGGCTTATCCTCACCTTCACTCCCTCGTTTCCAAACTCTTACGTTTTCATCAATGGTATCGAGGTACTTTCCATGCCAACCGATTTATATTACACACCAGAAAATGAGACAGGCTTTACGTTCTTCGAATGTAGCACGCTGTACAGCATTGGAACCAGCTTTGCGCTTCAGACTGAGTATAGAATCAAATCTGGATGGCAAGTAGAAATCCCACCACAAAAAGACACTGGTTTGTTCAGGAATTGGGTTAACGAAAAACCTTATTTTATTGAACAAAATTCACACTTGAATGATGTATCAACTGACTACAGTAATATGACGATAACCGTGAATCCTTATTACGTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAGCATGGGCACAAACGCCACTTTTAACAGGATGAGAAACCTCACTTGGGAGTTCCCCGTTGATTGTGGCTTCACTTACGTTCTCAGACTCCACTTCTGCGAGCTTGATCCCTATATTAATGACATCGGTGACAGGCGATTCTTCATTTACATAGCGAGCCAGTTGGCTGAACCAGGTGCAGATGTAATGAAATGGACTCAGAAACAAAAAGGTCTAGCTGTGCATAAAAATTATGCCGTTTTGATTCCCAATATTGGTACTCAAAAGAAGTTTAATCTCTCCCTTCAAATGCATCCTTCCGAACACTCGAGATACAGCGACGCCTTTCTGAACGGTGTTGAGATTTTCAAAGTCAGCCAGGCCGGGTCAAACAGTCTCGCGGGACCCAACCCAGACCCGTCTCAAACTCCAGACATCAGCATTCATGGCCAAAACGGAAAGATCCGCAGGGGTAGTGGAACGGATATAATTGAAGTCGACGTGGGGCTGGTATCCGGCGTTGTTCTGATTTCTCTTGCCGTTTTCCTTGTCGCATTTTTACTATACAAGAGAACACCTTATACTAAGAGCAAGGATTACGAATGCAAGTCAACGACCACGCGGAATTCCTCCCTCCCGACAGATCTCTGCCGCCGCTTCTCTCTCGACGAGATGAGAGCGGCCACCCAAAACTTCGACAAAGTCTTCATCATCGGCACCGGAGGATTCGGCCAGGTGTACAAGGGCTATATAGACGAGGGCTCCGTTCCCGTCGCCATCAAGCGCCTTAAACGGGATTCGCAGCAGGGGCCTCGCGAGTTCTCGAACGAAATCAACATGCTCTCGCAACTACGCCACCTCAATGTCGTGTCCCTCATCGGCTACTGCAACGATAATAAGGAAATGATCTTGGTTTACGATTTCATGACACGTGGCAACCTCCGCGACCATCTGTACAACACGGACAATCCCCCTATCTCGTGGAAGCAGCGGTTGCATATCTGTATCGGCGCGGCGCATGGACTGAACTATCTCCACACAGGAGCGAAGCACACGATCATCCACCGGGACGTGAAAACGACGAACATCCTATTGGATGATAAGTGGGTGGCAAAGGTTTCGGACTTCGGACTTTCAAGGCTGGGGCCTATTGGAACTTCGAAAACCCACGTCAGCACCGATGTGAAGGGTAGCTTCGGATATTTGGATCCTGAGTATTATAAACGATACCGTTTAACGGAAAAGTCCGACGTGTATTCTTTCGGGGTTGTGCTTTTTGAGATACTGTGTGGTCGTCCGCCTTTGATTCACAGTGCGGAGAGGCAACAGGTGTCGCTTTCTAATTGGGTGAGACATTGTTACGAAAGTGGAACCATAGCAGAGATTGTTGAGCCGACGTTGAAGAAGGAGATTGCAGCAGAGTGCTTAAAGAAGTTTTGTGAGATTGGGGTGAGTTGTTTGTTGGAAGATGGGTCGCTGAGGCCGTCCATGGAGCATGTGGCGGCGATGCTAGAGTTTACTCTGGAGCTACAAGAAAGTGCGGAGCAGCGCCAAAATGTTAATGTTGCTATTCCTAACTGA 4314 0.4815 MAITTSLKLFFLLLHFSTRLQAYTSEEVFTINCGTTGKSSDGQRTWTGDEDTKYLTFQDTTVSDKAITQSPSANQVPFSTARLSRSQFNYSFPVSPGSKFLRLFFYPADYSFFPRTQASFHVQSNQFTLLNAFNASLNTDAQATDTVFREYVVNVNDGERLILTFTPSHPNSYAFINGIEVLSMPTDLYYTPENDTGFTNIGISTLYSVGTSFALQTEYRIKAGGQEILPYNDSGLFRDWAAEERYFIKYNPENDDLLADMDGKMNITVNPDYVAPKELFRTARSMGRYATLNRMSNLTWEFPVDCGFTYVLRLHFCELDPYINDIGDRQFYIYIASQLAEVRADVMKWSQKQKGLVVHKNYAVFIPQNGSQKKFNLSLQMQPDGSNVDSKYANALLNGLEIFKISNSNNLAGPNPDPVQTPQNNIPGQNGKTIAGVLSGVVLILIIVFLVVFLRYKRNTYTKSRDCESKSTTIFLPTDLCRRFSFAEMRAATQNFDEVLIVGTGGFGQVYKGYIDEGSVPVAIKRLKPDSQQGAREFLNEIKMLSQLRHLNVVSLIGYCNDNKEMILVYDFITRGNLRDHLYNTDNPAISWKQRLQICIGAARGLHYLHTGAKHTIIHRDVKSTNILLDDNLSPQTMAILTLFFFLLPFSTHLQAYIPEEVFTINCGTTGNSSDGQRTWTGDADTKYLSSQDITVSDKAPTQSPSANQVPFSTARLSSSQFNYSFPVSPGTKFIRLFFYPADYPSFPRTHASFSVLSNQFTLLNDFNASLNADAQVMDTIFKEYVVNVNDGERLILTFTPSFPNSYVFINGIEVLSMPTDLYYTPENETGFTFFECSTLYSIGTSFALQTEYRIKSGWQVEIPPQKDTGLFRNWVNEKPYFIEQNSHLNDVSTDYSNMTITVNPYYVAPKELFRTARSMGTNATFNRMRNLTWEFPVDCGFTYVLRLHFCELDPYINDIGDRRFFIYIASQLAEPGADVMKWTQKQKGLAVHKNYAVLIPNIGTQKKFNLSLQMHPSEHSRYSDAFLNGVEIFKVSQAGSNSLAGPNPDPSQTPDISIHGQNGKIRRGSGTDIIEVDVGLVSGVVLISLAVFLVAFLLYKRTPYTKSKDYECKSTTTRNSSLPTDLCRRFSLDEMRAATQNFDKVFIIGTGGFGQVYKGYIDEGSVPVAIKRLKRDSQQGPREFSNEINMLSQLRHLNVVSLIGYCNDNKEMILVYDFMTRGNLRDHLYNTDNPPISWKQRLHICIGAAHGLNYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRLGPIGTSKTHVSTDVKGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCGRPPLIHSAERQQVSLSNWVRHCYESGTIAEIVEPTLKKEIAAECLKKFCEIGVSCLLEDGSLRPSMEHVAAMLEFTLELQESAEQRQNVNVAIPN 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2035g00002 1437 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Vium2035g00002 1437 FunFam FERONIA receptor-like kinase 847 1037 - -
Vium2035g00002 1437 SMART serkin_6 1143 1418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2035g00002 1437 Pfam Protein tyrosine and serine/threonine kinase 1149 1414 IPR001245 GO:0004672|GO:0006468
Vium2035g00002 1437 Pfam Protein tyrosine and serine/threonine kinase 502 632 IPR001245 GO:0004672|GO:0006468
Vium2035g00002 1437 SUPERFAMILY Protein kinase-like (PK-like) 473 633 IPR011009 -
Vium2035g00002 1437 MobiDBLite consensus disorder prediction 1042 1063 - -
Vium2035g00002 1437 MobiDBLite consensus disorder prediction 1042 1060 - -
Vium2035g00002 1437 CDD STKc_IRAK 1149 1416 - -
Vium2035g00002 1437 FunFam Receptor-like protein kinase FERONIA 1220 1435 - -
Vium2035g00002 1437 FunFam FERONIA receptor-like kinase 213 406 - -
Vium2035g00002 1437 Gene3D Transferase(Phosphotransferase) domain 1 573 651 - -
Vium2035g00002 1437 Gene3D Transferase(Phosphotransferase) domain 1 1220 1435 - -
Vium2035g00002 1437 ProSitePatterns Protein kinases ATP-binding region signature. 1149 1172 IPR017441 GO:0005524
Vium2035g00002 1437 Gene3D Phosphorylase Kinase; domain 1 481 572 - -
Vium2035g00002 1437 FunFam receptor-like protein kinase FERONIA 457 572 - -
Vium2035g00002 1437 FunFam FERONIA receptor-like kinase 28 185 - -
Vium2035g00002 1437 Pfam Malectin-like domain 31 405 IPR024788 -
Vium2035g00002 1437 Pfam Malectin-like domain 665 1036 IPR024788 -
Vium2035g00002 1437 FunFam receptor-like protein kinase FERONIA 1105 1219 - -
Vium2035g00002 1437 PANTHER OS03G0124300 PROTEIN-RELATED 8 463 IPR046957 GO:0004672
Vium2035g00002 1437 SUPERFAMILY Protein kinase-like (PK-like) 1118 1418 IPR011009 -
Vium2035g00002 1437 Gene3D - 849 1038 - -
Vium2035g00002 1437 Gene3D - 23 185 - -
Vium2035g00002 1437 Gene3D - 659 819 - -
Vium2035g00002 1437 Gene3D - 214 407 - -
Vium2035g00002 1437 ProSiteProfiles Protein kinase domain profile. 496 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2035g00002 1437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vium2035g00002 1437 FunFam FERONIA receptor-like kinase 662 819 - -
Vium2035g00002 1437 Gene3D Phosphorylase Kinase; domain 1 1105 1219 - -
Vium2035g00002 1437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1264 1276 IPR008271 GO:0004672|GO:0006468
Vium2035g00002 1437 ProSiteProfiles Protein kinase domain profile. 1143 1418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2035g00002 Vium-Chr2035 22521 31654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2035g00002 23 631 Receptor kinase-like Gene Family AT3G51550 44.817 4.05e-157 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2035g00002 Malectin_like 3.8e-35 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2035g00002 - - gmx:100804042 1927.52