Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2034g00021 ATGCAGTACTCCTATATAAAACGCAATATATATCTCACAAAGAAGGTCAAAAGATCCCGGTTTGATGATGATGGCATATTCTGTTCCTGTACTCCTTCCGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAACATGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGATAGAACATGTGAGGAAAGGCTTTGGAACATGAAACACCGTGGTGAAACAAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAATAAATCAAGATACATCAACCATAGTTGCTGTCCAAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAGAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTACATGTAGGCATAAATTGGGTGTTCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGCTTGCAAATTGGAGGTTCTCGTGTTAACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAAAGCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATGAACATTCTCGAAAACATTCAATCATGTTTGAGGATGGTTGTGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 924 0.3918 MQYSYIKRNIYLTKKVKRSRFDDDGIFCSCTPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAATCRHKLGVRPTKPKMSSDAALKLVAYQVYQNGRLQIGGSRVNHRKCLHNCIGEVIRIKSFEKERFGVIKRFDEHSRKHSIMFEDGCVEIYDMSKEDWELVR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2034g00021 307 PANTHER SET DOMAIN PROTEINS 2 237 - -
Vium2034g00021 307 ProSiteProfiles SET domain profile. 74 191 IPR001214 GO:0005515
Vium2034g00021 307 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 251 IPR025787 -
Vium2034g00021 307 SMART set_7 74 197 IPR001214 GO:0005515
Vium2034g00021 307 Gene3D SET domain 1 229 IPR046341 -
Vium2034g00021 307 ProSiteProfiles AWS domain profile. 23 72 IPR006560 GO:0005634|GO:0042054
Vium2034g00021 307 Pfam SET domain 85 190 IPR001214 GO:0005515
Vium2034g00021 307 SMART shorttest3 23 73 IPR006560 GO:0005634|GO:0042054
Vium2034g00021 307 ProSiteProfiles Post-SET domain profile. 197 213 IPR003616 -
Vium2034g00021 307 FunFam Histone-lysine N-methyltransferase 1 229 - -
Vium2034g00021 307 CDD SET_ASHR3-like 75 213 - -
Vium2034g00021 307 SMART PostSET_3 197 213 IPR003616 -
Vium2034g00021 307 SUPERFAMILY SET domain 2 209 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2034g00021 Vium-Chr2034 158219 167476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2034g00021 47 212 C2H2 Transcription Factor Family AT2G23740 34.946 3.04e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium2034g00021 SET 8.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2034g00021 - - pvu:PHAVU_004G131700g 605.905