Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2034g00019 ATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCATTTTGGATCTGTTTTCAACAAGTTGTTGAAGGAGCTTCGAGAACCTGTTGACTTTGAACTTCCTAATTGGTTTAATAAATCAAAGCCAATGCAGTACTCCTATATAAAACGCAATATATATCTCACAAAGAAGGTCAAAAGATCCCGGTTTGATGATGATGGCATATTCTGTTCCTGTACTCCTTCCGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAACATGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGATAGAACATGTGAGGAAAGGCTTTGGAACATGAAACACCGTGGTGAAACAAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAATAAATCAAGATACATCAACCATAGTTGCTGTCCAAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAGAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTACATGTAGGCATAAATTGGGTGTTCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGCTTGCAAATTGGAGGTTCTCGTGTTAACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAAAGCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATGAACATTCTCGAAAACATTCAATCATGTTTGAGGATGGTTGTGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 1047 0.3897 MPAMKKNSEQTHFGSVFNKLLKELREPVDFELPNWFNKSKPMQYSYIKRNIYLTKKVKRSRFDDDGIFCSCTPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAATCRHKLGVRPTKPKMSSDAALKLVAYQVYQNGRLQIGGSRVNHRKCLHNCIGEVIRIKSFEKERFGVIKRFDEHSRKHSIMFEDGCVEIYDMSKEDWELVR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2034g00019 348 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 292 IPR025787 -
Vium2034g00019 348 ProSiteProfiles SET domain profile. 115 232 IPR001214 GO:0005515
Vium2034g00019 348 ProSiteProfiles Post-SET domain profile. 238 254 IPR003616 -
Vium2034g00019 348 Gene3D SET domain 28 270 IPR046341 -
Vium2034g00019 348 SMART PostSET_3 238 254 IPR003616 -
Vium2034g00019 348 FunFam Histone-lysine N-methyltransferase 30 270 - -
Vium2034g00019 348 Pfam SET domain 126 231 IPR001214 GO:0005515
Vium2034g00019 348 CDD SET_ASHR3-like 116 254 - -
Vium2034g00019 348 SUPERFAMILY SET domain 27 244 IPR046341 -
Vium2034g00019 348 ProSiteProfiles AWS domain profile. 64 113 IPR006560 GO:0005634|GO:0042054
Vium2034g00019 348 SMART set_7 115 238 IPR001214 GO:0005515
Vium2034g00019 348 PANTHER SET DOMAIN PROTEINS 25 277 - -
Vium2034g00019 348 SMART shorttest3 64 114 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2034g00019 Vium-Chr2034 158218 167476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2034g00019 88 253 C2H2 Transcription Factor Family AT2G23740 34.946 2.53e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium2034g00019 SET 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2034g00019 - - gmx:100808183 664.455