Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2034g00017 ATGCCTTTGAAGGAATCAAGAATATCAAGTACTCTATCAGATTTCATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCATTTTGGATCTGTTTTCAACAAGTTGTTGAAGGAGCTTCGAGAACCTGTTGACTTTGAACTTCCTAATTGGTTTAATAAATCAAAGCCAATGCAGTACTCCTATATAAAACGCAATATATATCTCACAAAGAAGGTCAAAAGATCCCGGTTTGATGATGATGGCATATTCTGTTCCTGTACTCCTTCCGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAACATGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGATAGAACATGTGAGGAAAGGCTTTGGAACATGAAACACCGTGGTGAAACAAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAATAAATCAAGATACATCAACCATAGTTGCTGTCCAAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAGAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTACATGTAGGCATAAATTGGGTGTTCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGCTTGCAAATTGGAGGTTCTCGTGTTAACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAAAGCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATGAACATTCTCGAAAACATTCAATCATGTTTGAGGATGGTTGTGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 1092 0.3874 MPLKESRISSTLSDFMPAMKKNSEQTHFGSVFNKLLKELREPVDFELPNWFNKSKPMQYSYIKRNIYLTKKVKRSRFDDDGIFCSCTPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAATCRHKLGVRPTKPKMSSDAALKLVAYQVYQNGRLQIGGSRVNHRKCLHNCIGEVIRIKSFEKERFGVIKRFDEHSRKHSIMFEDGCVEIYDMSKEDWELVR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2034g00017 363 ProSiteProfiles Post-SET domain profile. 253 269 IPR003616 -
Vium2034g00017 363 Gene3D SET domain 43 285 IPR046341 -
Vium2034g00017 363 SMART set_7 130 253 IPR001214 GO:0005515
Vium2034g00017 363 FunFam Histone-lysine N-methyltransferase 45 285 - -
Vium2034g00017 363 ProSiteProfiles AWS domain profile. 79 128 IPR006560 GO:0005634|GO:0042054
Vium2034g00017 363 SMART shorttest3 79 129 IPR006560 GO:0005634|GO:0042054
Vium2034g00017 363 SUPERFAMILY SET domain 42 259 IPR046341 -
Vium2034g00017 363 PANTHER SET DOMAIN PROTEINS 32 292 - -
Vium2034g00017 363 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 52 307 IPR025787 -
Vium2034g00017 363 SMART PostSET_3 253 269 IPR003616 -
Vium2034g00017 363 Pfam SET domain 141 246 IPR001214 GO:0005515
Vium2034g00017 363 ProSiteProfiles SET domain profile. 130 247 IPR001214 GO:0005515
Vium2034g00017 363 CDD SET_ASHR3-like 131 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2034g00017 Vium-Chr2034 158217 167508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2034g00017 103 268 C2H2 Transcription Factor Family AT2G23740 34.946 2.42e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium2034g00017 SET 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2034g00017 - - gmx:100808183 664.455