Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2033g00001 ATGTCATCTTTGATTTATCCACGCTTTGTTTTCCAAGAAACACTGATGTTTTGGCTTAAAACCGAAATTGCAAGAGATCTTATTGATACACAGAAAGTGAAAGCAATTATAGGACCTGATACATGGAAAGAGACAACTTTAGTGGCTGATATTTGTAACCAAAATGTGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAAATTGGTCAACTTTGAAGTGGCCCTACCTTGTGCAAATCTCACCTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTACATTCCTTTGAATGGTACAACGTTAACATAATATACGATGATACTGATTCTTCTTCCACGAGAATGTTCTCTCATCTCTATAGAGATCTCAGTGTGTCAGGTATTCATATAAGCAATGTTTTGACCATCCCTCCGTTAAGCTCCTCTTCATTGTCTCAAGAATTAGAGAAGCTTAGGGATGGCTATTGCAGAGTTTTTGTTGTTAATTTGTCAGTTTCTTTGGCCATAAACATGTTTCAAACTGCAAAAGAATTGAAAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACAAATCTTGTCCATTCATTGAACTCTTCTACTATATCATCAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGGACTTCTACTCTAAATTTAGAAAAAAGTTTAGCTTAGAGAACCCTCATGAGCTTAATAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTAGCTCTATCCATGATCCAAACAACCAACAAAAAAGATCAAACGTTACTGGATAAGGTTCTACTCAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCACTGACCAAAAGTTAGATCCTTCAGATATTTTTCAGATCATCAATGTGATGGGGAAAGATTATAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATATTATAGGCCAAAATGCTACTTTCAATTTTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGATTCCAGCATTGGATAAACCACTAAGAATTGGGGTCCCCGTTTTGGCAACATTGAAACAATTCATAACTGTAATTCAGGACCCAACAGAAAACACCACCACTTTCCAAGGATTCACCATTGATCTTTTTAGAGAAACTATGGAGTTGTTGCCCTATCACTTGCCCTACAAATTCTATCCTTTCAATGACACGTACGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCGGTAATTGATGTGACTATAATTTCATATCGATATCAGTATGCAGAATTCACTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAAATCAAATGTGGATCATAGAGGTTGGTTATTTATGAAACCTTTTACAAAGACTATGTGGCTTTTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGCTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTACTGAACGGCTTGAACCAACTATAGATAATATTGATCAGCTACGGAATAGCAACATCAGGGTTGGATACAGTTCTGGATCCTTTCTGAAACATTACGTGGAGAAAGTGTTGCAGTTCCACCCTGAAAACATGAGGAACTATGGAGAACTTGAAGAGTATGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGCTGCCTTTCTGGAAGTTCCTGCAGCCAAAATTTTCCTAGCAAATTACTGTAAAGAGTTTATTCAAGCTGGGCCTTTGTACAAAATTGGAGGATTTGGATTTGCATTTGCAAGGGGGTCTCCATTGNTGGTGAAGCAAGTTTATTTGAAGTATGCAGAATTCACTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAAATCAAATGTGGATCATAGAGGTTGGTTATTTATGAAACCTTTTACAAAGACTATGTGGCTTTTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGCTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTACTGAACGGCTTGAACCAACTATAGATAATATTGATCAGCTACGGAATAGCAACATCAGGGTTGGATACAGTTCCGGATCCTTTCTGAAACATTACGTGGAGAAAGTGTTGCAGTTCCACCCTGAAAACATGAGGAACTATGGAGAACTTGAAGAGTATGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGCTGCCTTTCTGGAAGTTCCTGCAGCCAAAATTTTCCTAGCAAATTACTGTAAAGAGTTTATTCAAGCTGGGCCTTTGTACAAAATTGGAGGATTTGGATTTGCATTTGCAAGGGGGTCTCCATTGTTTCCTTATGTAAACAAAGCACTTCTATATTTAGTAGAAATCGGCAAG 2802 0.3911 MSSLIYPRFVFQETLMFWLKTEIARDLIDTQKVKAIIGPDTWKETTLVADICNQNVTPVLSLADATPNWSTLKWPYLVQISPNQFKQMKAVAAIVHSFEWYNVNIIYDDTDSSSTRMFSHLYRDLSVSGIHISNVLTIPPLSSSSLSQELEKLRDGYCRVFVVNLSVSLAINMFQTAKELKMMEKGYVWIVTDPLTNLVHSLNSSTISSMQGIVGVKSYFPEIGLQYEDFYSKFRKKFSLENPHELNNEPGIFAARAYDAAWTLALSMIQTTNKKDQTLLDKVLLNNFTGLSGKIHFTDQKLDPSDIFQIINVMGKDYKEIGFWTNGLGFSNIIGQNATFNFSMKELGQVLWPGRPWGTPRGWIPALDKPLRIGVPVLATLKQFITVIQDPTENTTTFQGFTIDLFRETMELLPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSNVDHRGWLFMKPFTKTMWLLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTTERLEPTIDNIDQLRNSNIRVGYSSGSFLKHYVEKVLQFHPENMRNYGELEEYAEAFRRKEIGAAFLEVPAAKIFLANYCKEFIQAGPLYKIGGFGFAFARGSPLXVKQVYLKYAEFTQPYTDPGVVMVVPLKSNVDHRGWLFMKPFTKTMWLLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTTERLEPTIDNIDQLRNSNIRVGYSSGSFLKHYVEKVLQFHPENMRNYGELEEYAEAFRRKEIGAAFLEVPAAKIFLANYCKEFIQAGPLYKIGGFGFAFARGSPLFPYVNKALLYLVEIGK 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2033g00001 934 FunFam Glutamate receptor 87 248 - -
Vium2033g00001 934 Pfam Ligand-gated ion channel 490 595 IPR001320 GO:0015276|GO:0016020
Vium2033g00001 934 Gene3D - 714 861 - -
Vium2033g00001 934 Gene3D - 482 625 - -
Vium2033g00001 934 Gene3D - 367 481 - -
Vium2033g00001 934 Gene3D - 83 325 - -
Vium2033g00001 934 Pfam Ligand-gated ion channel 726 831 IPR001320 GO:0015276|GO:0016020
Vium2033g00001 934 Pfam Bacterial extracellular solute-binding proteins, family 3 395 681 IPR001638 -
Vium2033g00001 934 CDD GluR_Plant 369 682 - -
Vium2033g00001 934 PIRSF IGluLR_plant 18 687 IPR017103 -
Vium2033g00001 934 PIRSF IGluLR_plant 686 934 IPR017103 -
Vium2033g00001 934 SMART GluR_14 372 721 IPR001320 GO:0015276|GO:0016020
Vium2033g00001 934 FunFam Glutamate receptor 717 855 - -
Vium2033g00001 934 Pfam Receptor family ligand binding region 22 313 IPR001828 -
Vium2033g00001 934 SUPERFAMILY Periplasmic binding protein-like I 21 363 IPR028082 -
Vium2033g00001 934 CDD PBP1_GABAb_receptor_plant 24 332 IPR044440 -
Vium2033g00001 934 Gene3D - 24 306 - -
Vium2033g00001 934 FunFam Glutamate receptor 366 480 - -
Vium2033g00001 934 FunFam Glutamate receptor 481 619 - -
Vium2033g00001 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 685 IPR015683 -
Vium2033g00001 934 SUPERFAMILY Periplasmic binding protein-like II 690 931 - -
Vium2033g00001 934 SUPERFAMILY Periplasmic binding protein-like II 368 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2033g00001 Vium-Chr2033 6924 10996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2033g00001 691 931 Ion Channels AT2G29110 36.929 1.27e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2033g00001 - - vum:124828866 1869.36