Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium202g00012 ATGGCAAACTGTCACCGGAATAGCGTTGGATCCATCGCTCTCGACCACCGACACACTGAGAAAAATGCCACTGCTGGCGGCCACTTCCGTGTGCTCCGCCGCTTGATCTTCGATGCCGTCAGCTGCGGCGGCACCTCCCGCTACCGTTATCGCCAGCGTGGCGGCGGCGAAGGAAGCGTTGGTGACTTTAGTTCGGTGGCTAGTCATGCAGAGAAGGAGGAGAGGTCGGAGAAGAGGTCGGAGAAGCTGTCGGATCTGCTGAACGCGGCGGAGACGAAAACGGATGCGGAGGTGGCGAGGAAGGAGGAGGCATTGGCGGAGCTGAAGCGAGTGGTGAAGGAGTTGCGCGAAGAAGACCTCTCGATGCGGAGAATCGCGGCGGAGAGAGTGAGGTCGCTGGCGAAGGAAGATGCCGAAGCGAGAGCGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATTCGGAAGACGCTCGTTCGCAAATCGCTTCGCTCTATGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAACAAAGCGACTGTAGTGAAAATCGGCACTGTACACAAGATGCTGAAACTAATTGAATCGAGTGATTCAAATTCGTCGGTGGCCGAAGCGATTATTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAGTTGGTTCCTCCGGTGCAATACCGTTCCTTGTTAGCACCCTAAAAAATTTAGAGGCTAGTAAAACCGTATCACAATCCCAATCGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCAATATGTCAGAGCAACATTTCGGTTATTCTGGAGACTGATTTGGCTTGGTTTTTAGTGAGCGCGATAGGGGACATGGAAGTGAGCGAGAGGAGTCTGGCGATTCTGAGCAATTTAGTGTCGACTCCGGAGGGAAGAAAAGCGATCGGTGGTGTGAGCGATGCTATTCCGATTCTGGTGGATGTGTTGAGTTGGACGGACTCGCCAGAGTGCCAAGAGAAGGCGTCGTATGTGCTGATGATTATGGCACACAAAGCTTACGGGGACAGGAGGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTGCTTGAGTTGACGCTTGTCGGAACCACGTTAGCTCAGAAGAGAGCCTCCAGAATATTGGAGTGTTTGAGGGTGGACAAGGGGAAACAGGTTTCAGGGAGCTACGCTGCAAACTTGAATTTGGGTGTCTCTGCTCCTATTTGTGGTGGCTCTTCTTCCTCCGAGGGTGGTGCAGGAGGAAGAGGGTCCTTGGTGGAGGAGGAAGATGGAATGATGATGAGTGAGGAAAAGAAAGCAGTGAAACAGTTGGTGCAGCAAAGTCTGCAGAATAACATGATCAAAATCGTGAAGAGGGCCAACTTGCGTCAGGATTTCGTTCCATCTGCCCAAATTGCTTCACTCACTTCGAGTTCCACTTCCAAGAGCCTCCCATTTTGA 1488 0.5208 MANCHRNSVGSIALDHRHTEKNATAGGHFRVLRRLIFDAVSCGGTSRYRYRQRGGGEGSVGDFSSVASHAEKEERSEKRSEKLSDLLNAAETKTDAEVARKEEALAELKRVVKELREEDLSMRRIAAERVRSLAKEDAEARANLAMLGAIPPLVGMLDSEDARSQIASLYALLNLGIGNDANKATVVKIGTVHKMLKLIESSDSNSSVAEAIIANFLGLSALDSNKPIVGSSGAIPFLVSTLKNLEASKTVSQSQSQVKQDALRALYNLSICQSNISVILETDLAWFLVSAIGDMEVSERSLAILSNLVSTPEGRKAIGGVSDAIPILVDVLSWTDSPECQEKASYVLMIMAHKAYGDRRAMIEAGIVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSYAANLNLGVSAPICGGSSSSEGGAGGRGSLVEEEDGMMMSEEKKAVKQLVQQSLQNNMIKIVKRANLRQDFVPSAQIASLTSSSTSKSLPF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium202g00012 495 Coils Coil 73 93 - -
Vium202g00012 495 MobiDBLite consensus disorder prediction 51 82 - -
Vium202g00012 495 MobiDBLite consensus disorder prediction 67 82 - -
Vium202g00012 495 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 495 - -
Vium202g00012 495 Coils Coil 98 118 - -
Vium202g00012 495 Gene3D - 81 250 IPR011989 -
Vium202g00012 495 Gene3D - 251 407 IPR011989 -
Vium202g00012 495 SUPERFAMILY ARM repeat 108 393 IPR016024 -
Vium202g00012 495 SMART arm_5 222 271 IPR000225 GO:0005515
Vium202g00012 495 SMART arm_5 311 353 IPR000225 GO:0005515
Vium202g00012 495 SMART arm_5 137 177 IPR000225 GO:0005515
Vium202g00012 495 SMART arm_5 179 221 IPR000225 GO:0005515
Vium202g00012 495 SMART arm_5 272 310 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium202g00012 Vium-Chr202 130942 133158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium202g00012 117 400 U-box Gene Family AT1G67530 30.928 7.15e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium202g00012 - - gmx:100818576 711.449