Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium202g00003 ATGAGTAGTTTGGTGGAGAGGCTTCGTGTAAGATCGGATCGCAGGCCAATTTATAATCTTGATGAGTCAGATGATGATGCTGATTTTTTGCCAAGAAAACCCGGGACAACACAGGAAAAGTTGGAGAGAATAGTAAGAACTGATGCGAAAGAGGATTTATGTCAAGCCTGCGGTGAAAATGAGAATCTTGTGAGTTGTGAAACTTGCACTTATGCTTACCATCCTAGGTGTTTACTTCCACCCCTTAAGGGACCTCTTCCAGACAATTGGAGATGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACAAAATTAGGGTCAAAACAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAAGGCCTATCATATCTGCACTGCACATGGGTGCCGGAGAAAGAGTTTTTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAAGTGAACAACTTCCATCAGAAAATGGCGTCTATCAATACCTCTGATGATGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGACCGGATACTTTCTTGCAGGGGTGATGATGATGAGAGAGAATACCTTGTGAAGTGGAAGGAACTTCCATATGATGAGTGTTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTGCGGTCTAGATCCAGTAAATTTTCTTCTAGTAAACATAAACAGAGTGTCAAAGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTATGAACACAGCCCTGAGTTTCTCTCAGGTACACTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGAAAAACCATACAAAGTATTGCTTTCCTGGCATCTCTTTTTGAAGAGAGTGTCTCCCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGAAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAAAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAATTTGATGTTCTTTTGACATCGTATGAGATGATCAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTCGATGAAGGTCACCGTTTGAAAAATAAGGATTCTAAATTATTTTCCTCACTCAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGCTGGCCCCACATCTCTTGCGGAGAGTGAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAGCAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGCGGAAACTTTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGATGCAAAAGAAGCATACAAACAGCTATTGGAAACGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACATAGAGTCCTTATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAGAGGATTGATGGCAAGGTTGGGGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCAACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACTGCTGACACGGTTATCATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAGAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGGTATGGATCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGACGAGGAAGAAGATGGATTTCTGAAAGCTTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCGGCAGAGGAGGCTGCCGCCCAAAAAAGAGCATTAGAGAATGTGAACAGTTCGGAGAGAACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGAAAAGGAAAGCGTAACCGGAAGCTGATGGTTTCTGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTTAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCCACTGGAACTGGAACTGCTACTGCTAAAAGGCCCTATAAGAAAAAAGCTCGTAATAGCTCAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTACGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCTCATATCTCTGAAGATATAACCGAGTCCTCTACATTCACAGATGGTGTACCAAAAGATGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTCCTGCTCTTGATAAGGGACAAGGTGAAGTTTGCGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATCTTATTACGCTATCCAGGTTTGAAGGGTGCGAAAATATGGAAGGAGGAGCATGATTTGGTTTTGTTGCGTTCCGTTTTAAAGCATGGTTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGCCACAAAATGGTGCAAATTTGACAAATGCCGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGAAGTGATATACCAGCCGATGGTGCGCAAGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAAAGAAGACAAGTTGAGTTTATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAATACTTTGGCGATCCAAAATCAAATGACGAACTTAAAAGTGAATCCAAGGCTCCTAAATTAGGGGAAACTGACACCCAAATGATTGATCAACTACCGCAAGTAGAAACAATAGCTACAGAAGAAATTTCGTCCGCTTGTGATAGTGATCCTAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGATAATGGAGGAAAACCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTTCATGTAGGGAAGAATTTCTTACCCGTAGAAACCATCTGCAAAGACATCGACAGGATTCTAACACCCACAGAAGAACAATCTGCTGCAGATATTCCAATGTCAAATTCAGAGAACAAATCAGAGGTTATGTCCAAGAGCGAGATTTTGGCCAAATCATTGCCAACCCCTACCCCTCATGACTCCGCAAACAATGAGAGTAAAGACATGCTAATAGATACGAATGAAATTCAGACTCTTCCAGACAAAGAGAAAAGTAATACAGTAATGGATGAAACCATGACTGATGCTCAGTAG 4203 0.4054 MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKPGTTQEKLERIVRTDAKEDLCQACGENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASINTSDDDFVAIRPEWTTVDRILSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRLRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEESVSPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAAQKRALENVNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTATAKRPYKKKARNSSEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHISEDITESSTFTDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQPQNGANLTNAEVPNSQSRENGGSDIPADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSESKAPKLGETDTQMIDQLPQVETIATEEISSACDSDPNRLELVRLYNEMCKIMEENPMDLVQTSLAREPAELHVGKNFLPVETICKDIDRILTPTEEQSAADIPMSNSENKSEVMSKSEILAKSLPTPTPHDSANNESKDMLIDTNEIQTLPDKEKSNTVMDETMTDAQ 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium202g00003 1400 SMART DUF1086_2 915 1070 IPR009462 GO:0003677|GO:0006338
Vium202g00003 1400 CDD CD2_tandem 190 239 - -
Vium202g00003 1400 Coils Coil 837 860 - -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 1330 1348 - -
Vium202g00003 1400 SUPERFAMILY Chromo domain-like 66 178 IPR016197 -
Vium202g00003 1400 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Vium202g00003 1400 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
Vium202g00003 1400 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Vium202g00003 1400 SMART PHD_3 53 96 IPR001965 -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 1219 1240 - -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 1327 1400 - -
Vium202g00003 1400 Gene3D - 282 527 IPR038718 -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 904 922 - -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 1136 1159 - -
Vium202g00003 1400 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Vium202g00003 1400 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Vium202g00003 1400 CDD CD1_tandem 98 171 - -
Vium202g00003 1400 SMART helicmild6 637 721 IPR001650 -
Vium202g00003 1400 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Vium202g00003 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 776 IPR027417 -
Vium202g00003 1400 SMART chromo_7 99 162 IPR000953 -
Vium202g00003 1400 SMART chromo_7 190 244 IPR000953 -
Vium202g00003 1400 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 1136 1173 - -
Vium202g00003 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 518 IPR027417 -
Vium202g00003 1400 SMART ultradead3 281 494 IPR014001 -
Vium202g00003 1400 SUPERFAMILY Chromo domain-like 185 242 IPR016197 -
Vium202g00003 1400 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Vium202g00003 1400 Gene3D - 188 241 - -
Vium202g00003 1400 SMART DUF1087_2 838 905 IPR009463 -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 1220 1237 - -
Vium202g00003 1400 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 57 1346 - -
Vium202g00003 1400 Pfam PHD-finger 54 96 IPR019787 -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 1359 1376 - -
Vium202g00003 1400 Pfam CHD subfamily II, SANT-like domain 935 1067 IPR009462 GO:0003677|GO:0006338
Vium202g00003 1400 Gene3D - 98 187 - -
Vium202g00003 1400 CDD SF2_C_SNF 606 732 - -
Vium202g00003 1400 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Vium202g00003 1400 Gene3D - 528 752 IPR027417 -
Vium202g00003 1400 Gene3D - 1037 1215 - -
Vium202g00003 1400 MobiDBLite consensus disorder prediction 904 953 - -
Vium202g00003 1400 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 483 IPR014001 -
Vium202g00003 1400 Pfam SNF2-related domain 305 585 IPR000330 GO:0005524|GO:0140658
Vium202g00003 1400 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Vium202g00003 1400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium202g00003 Vium-Chr202 52049 77345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium202g00003 248 782 RAD5 or RAD16-like Gene Family AT1G02670 23.539 6.00e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium202g00003 SNF2_N 3.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium202g00003 K11643 - gmx:100790230 2504.55