Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium202g00002 ATGACTGTGGAGAAGAGAATGAGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGATGACCCCATCTGCCTCATGGTTTTGGAAAACCTCCTCCGGAAATGTCAATATCATGTAACTACGACAAATCAAGCAATAACAGCGTTGTCGCTTTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCCGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAAGAGAAGAACAAAACGAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACATGGATCATCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAACAGGAGAATGATCATGACAATGATGACCCGTCAACCCAGAAGAAACCTCGGGTGGTTTGGTCTGTGGAACTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACTAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATCTGAGAATGAGTTCTGTGAATGGGGTTGGACATTTACAAACATTGACTGGTTCTGGGCAGCTTCATAACAATGGTTTTAGATCCTTTCCACCTGGTGGGATAATTAATAGGTTGAACACTCCTGCTGGTTTGAATGTGCACGGATTTCCTTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAACAACACTAATGATCATCTGAAGTTCCGGTCAGCCATCACTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCATTGTCTGTTCAAAACAATAAGAGTCTCATTTCTGTTCAAAATTTGACCTCCGTTTTTAATGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGATCCAAGACCAAAAATAACATCTGTCTCTCGCACTTCAGATGTAGGTATCTCAAACAATGGCTTGATGTTGGAACCATGCCCTCAAAGCACACAAGGGAGTGTAAGGATTGAAACTTTATCTTCAGTGGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGGTATAATGATAGTTGGACAAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTCTTACCCTCCAAGTGAATGTTTTAAACCGACAAATGTACCTCCTCCAGATAACATGGCTACTATACCCCTGCAAGGTGGGAATCTGACTGGTCCATCCATCACTTCACTGTCCAGGCAATCCCATGATTCAATGACCGATATGCATTCTGAAGGGTTGACTTTAACTAACAGACCTGGGAATATAAGCAGTAATGTACCGTTTCAAGGGTGGGATGACCGAAATCACGATGCTACTCATCATTCGAATAATATGTTTGCATCAATAAACTCACTGACTCCAGTCAATGGTGCTGCTGTTCCAGCGGGCCATGCAGCAGCAAACTCAGCCTCACATAGAAATTTGGACTTTAACTTTTGTGATCCCTTACAAATGAAGCATGATGGTTTTGTGGAATTAACTGAAGAGATCTCATCTAAGCAACATCAGGGGAATATCCTGAACCAGCAGAAGTCTCAACATAGTCATTTTTCTAGTAATCTTGGTTCATTGGAGGACTTGGTCAGTTCAATGATGAAACAGGAGAAAGACAGGCTGAAATTATTGGATGAAAACCTCTTTTGCGATAATTACCCTGGTGGGTTATCTATGTGA 2028 0.4275 MTVEKRMSDSGEEFPVGMRVLAVDDDPICLMVLENLLRKCQYHVTTTNQAITALSLLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNDDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVNGVGHLQTLTGSGQLHNNGFRSFPPGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNDHLKFRSAITPVNQNGVQGMPLSVQNNKSLISVQNLTSVFNAKTNFPISNKLPDPRPKITSVSRTSDVGISNNGLMLEPCPQSTQGSVRIETLSSVASQHSEFSLPLLDQGRYNDSWTSAVQPSVIQTNSYPPSECFKPTNVPPPDNMATIPLQGGNLTGPSITSLSRQSHDSMTDMHSEGLTLTNRPGNISSNVPFQGWDDRNHDATHHSNNMFASINSLTPVNGAAVPAGHAAANSASHRNLDFNFCDPLQMKHDGFVELTEEISSKQHQGNILNQQKSQHSHFSSNLGSLEDLVSSMMKQEKDRLKLLDENLFCDNYPGGLSM 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium202g00002 675 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vium202g00002 675 SMART REC_2 18 130 IPR001789 GO:0000160
Vium202g00002 675 FunFam Two-component response regulator 200 263 - -
Vium202g00002 675 Gene3D - 17 153 - -
Vium202g00002 675 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Vium202g00002 675 CDD REC_typeB_ARR-like 20 134 - -
Vium202g00002 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Vium202g00002 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 384 IPR045279 GO:0009736
Vium202g00002 675 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Vium202g00002 675 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vium202g00002 675 MobiDBLite consensus disorder prediction 151 171 - -
Vium202g00002 675 Gene3D - 200 263 - -
Vium202g00002 675 MobiDBLite consensus disorder prediction 141 204 - -
Vium202g00002 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Vium202g00002 675 Coils Coil 172 192 - -
Vium202g00002 675 PIRSF RR_ARR_type-B 1 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vium202g00002 675 SUPERFAMILY CheY-like 17 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium202g00002 Vium-Chr202 45163 49610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium202g00002 1 378 Response Regulator Gene Family AT2G25180 58.333 4.27e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium202g00002 Response_reg 6.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium202g00002 - K14491 gmx:100809002 1115.52