Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium202g00001 ATGGAAACACTGAGCTACCAGGCTCCCTGTGATAGCCTTTCTGTTGGAGTGACTCCTTCAAGTCCAAGCAAACCATTGCAGAATCCACAGAAGAAACTTGAGGAAGAAGAAGAGGGAGAAAAAGAGAAAAAAGGAGATACTTTACTGGATCTAAATGTCCCTGGTGATGATTCTGCTACTGGGTGCAGTCCGGTGCTGAATCTCATCACTTGTCTGGAAGCGGATTTGTCATCAGAAGACCCCCATGAGCCAAGAGTGTTCTCTTGCAACTACTGTCAGAGGAAGTTCTACAGTTCACAAGCTCTTGGTGGACACCAAAATGCTCACAAAAGAGAAAGGTCCATAGCAAAGAAAAGTCACAGATCAGTATCAACCATGGTGGCCCCAGCAACAGCTTTTGGAATTCCCTCTCTCCACAATCACCTTCCTCACTATCCCACTGTGGCTTCTCTGCCTCTCCACGGTGCTTTTGGTAATAAACCGCTTGGAATTCAGACTCACTGCATGATTCATAGGCCTCCTCCTCTTCTTCCTCCTCACTTCTCATTCAATGGTTTTTCAAACACTTTTGGACATCATCATGGGTGGTCAAGACCCCTTATTACTCAACAACCTGGGATAGGGAAGTTAACTATGGAAAGTTGTCGCAAAACATCACGAGACAAAGTTGACAGATTACAACTCAAGTCAGCAGGTAATGAAGAAATAAGTGAATATCTGGTTAGTGGAAATACTGGTTTGAAGACTGGTCAAGAGAAAAAGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 792 0.4432 METLSYQAPCDSLSVGVTPSSPSKPLQNPQKKLEEEEEGEKEKKGDTLLDLNVPGDDSATGCSPVLNLITCLEADLSSEDPHEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKKSHRSVSTMVAPATAFGIPSLHNHLPHYPTVASLPLHGAFGNKPLGIQTHCMIHRPPPLLPPHFSFNGFSNTFGHHHGWSRPLITQQPGIGKLTMESCRKTSRDKVDRLQLKSAGNEEISEYLVSGNTGLKTGQEKKKHLDLSLKL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium202g00001 263 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vium202g00001 263 SUPERFAMILY beta-beta-alpha zinc fingers 84 115 IPR036236 -
Vium202g00001 263 MobiDBLite consensus disorder prediction 1 49 - -
Vium202g00001 263 Gene3D Classic Zinc Finger 73 132 - -
Vium202g00001 263 MobiDBLite consensus disorder prediction 29 49 - -
Vium202g00001 263 MobiDBLite consensus disorder prediction 1 28 - -
Vium202g00001 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vium202g00001 263 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 25 263 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium202g00001 Vium-Chr202 30660 31700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium202g00001 34 263 C2H2 Transcription Factor Family AT5G10970 38.189 4.88e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium202g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium202g00001 - - vra:106761491 462.996