Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2027g00001 GTCTGTCCCGACTGCGACTGCGGATTCATCGAAGAAATCGAACACCCGCCGCGCTCAGTCCACCTCGACCCTCGCCATCGTCGCTTCCCTGCTGTCGCCATGTACATGATCGGCCAGCGTCCTGCCTCCGACAACGCTGTCCGTCCCTTCCTGCGCCGCACCCGCAACAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAACTGCCACCTCCACTACTAGCGAGGAGGAAAGCCGAGGCTTTGAGCTTTTCTACGATGATGGTGCCGGTTCTGGCTTAAGACCCATGCCTCCGAGCATGTCAGAGTTTCTACTCGGATTTGGATTCGATAGGCTTCTGGAGCAACTGTCTCAGATTGAGATCAACGGTATTGGAAGGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCCTTACCAACCATCGAAATTGATAACACTCACTTAGCCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACCGCAGTGAGGGAAATGTCGTGTAAGCATATATATCACCCTAAATGCATCTTACCATGGCTAGCTTCGAAGGGTTTCCATGGAGGCTTCAATGTGTTTAGGTGGCGGCATGGTTGTTATTGCGGCATGGTGGCCATGGAGGCTCGGGGTTTGGGTTTGGTGGAGGTGACGGAGGTGTGCTGCGGCGATGCGTTATTGGGGTGGTGCAGAGATAAACTTTCAAGTTCATGGCTCAAAACAAAAGGCAAAGAAGCGAGTCTAGTTTGGGCCCCGGTTTCCATGGAGGCTTCAATGTGTTTAGGTGGCGGCATGGTTGTTATTGCGGCATGGTGGCCATGGAGGCTCGGGGTTGACAGCGAGGTCGATGGTTTGGGTTTGGTGGAGGTGACGGAGGTGTGCTGCGGCGATGCGTTATTGGGGTGGTGCAGAGATAAACTTTCAAGTTCATGGCTCAAAACAAAAGCAAATTTCTCCGGTAGGGAAACCCTAACTGAGGTTAGTAAAAATGGCGGTACCCTTGATCTCAAAAAAGATCGTGAAGAAGCGAGTGAAGAAGTTCAAGCGCCCCAAAGCGATCGCAAGATCTGA 1107 0.5285 VCPDCDCGFIEEIEHPPRSVHLDPRHRRFPAVAMYMIGQRPASDNAVRPFLRRTRNNGGDRSPFNPVIVLRGSATATSTTSEEESRGFELFYDDGAGSGLRPMPPSMSEFLLGFGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDNTHLAMESHCAVCKEAFELGTAVREMSCKHIYHPKCILPWLASKGFHGGFNVFRWRHGCYCGMVAMEARGLGLVEVTEVCCGDALLGWCRDKLSSSWLKTKGKEASLVWAPVSMEASMCLGGGMVVIAAWWPWRLGVDSEVDGLGLVEVTEVCCGDALLGWCRDKLSSSWLKTKANFSGRETLTEVSKNGGTLDLKKDREEASEEVQAPQSDRKI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2027g00001 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 85 196 - -
Vium2027g00001 368 Pfam RING-like zinc finger 163 190 IPR001841 -
Vium2027g00001 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 201 IPR013083 -
Vium2027g00001 368 MobiDBLite consensus disorder prediction 342 368 - -
Vium2027g00001 368 MobiDBLite consensus disorder prediction 344 368 - -
Vium2027g00001 368 SUPERFAMILY RING/U-box 143 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2027g00001 Vium-Chr2027 15403 21378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2027g00001 102 198 C3H Transcription Factor Family AT5G01980 36.082 1.50e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2027g00001 K11982 - gmx:100807324 347.821