Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2026g00001 | ATGGCCACCTCTCACTATGTTTCAGACTCACGTGTCTCACGCATGCACTACTCCTCCACCGATGACGACCAAGATGATGATGATGAGGAGGAAGACGAGGAAGACGATGACTTCAAATTCTACGACACTAATGTCGGTGCCGAAGACGAGCCCAAGAAGCCTGACATCTTTTCCGGCAGCAGTTTCTGGCGGGAGTTCGGGGTGGTGCTGGATCCGCGAGCCAAATGGGTCCAAGAGTGGAACAGGGTGTTCCTCCTGGTGAGCACCATGGGGCTTTTCGTGGACCCTCTGTTCTTCTACGCGCTGTCCATAAGCGACACATGTATGTGCATCTTCATCGACGGCTGGCTCGTGGTCACCGTCACCGTGCTTCGGTGCATGACCGACACGTTGCACGTGTGGAACATGTGGCTCCATTTCAAGATGGCTAAACGCTCTTCTTCTCACGCCAGAGACTCTCACGCCTCTCGCGGTGGCTATGCTCTTCGCTACCTCAAGGCTAAGAGGGGTTTCTTCTTCGACCTCTTCGTCATCTTCCCCATTCCCCAGATTGTGTTATGGGTGGTAATTCCGTCTCTTTTGGAGAAAGGATCAATTACGTTAGTGATGACAGTGTTCTTAATCATGTTTCTCTTTCAATATCTTCCCAAAATTTATCACTCCGTTTGCCTCTTGCGTCGCATGCAAAATCTTTCTGGCTACATTTTTGGAACCGTTTGGTGGGGCATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCGTGTTGGTACTTGTTAGGGTTGCAAAGGGCAGCAAAGTGTTTGGAAGAACAGTGTGCAAAAACAGTAGGTTGTGGCTTGAGAACACTTTGCTGCAAAAAGCCTATATACTATGGAGGAAGTAGCATTGTAAGGGACAAAACCAGATTGGCATGGGCTGCAAACAGGGAAGCAAGGTCTACTTGTTTGGACACTGCTGATAACTACGACTATGGTGCATACGCATGGTCTGTTCAACTCATCACCAACGATAGCAGATTGGAAAAAATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATAATTGTGCTGACTAGTGGCCTCCTTCTAGTGACTATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCGACGACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGCAAAAGGAAGTTACCACAAAGTTTCAGGCAGCGCGTGAGAAACTATGAGAGGCAGCGTTGGGCTGCCATGCGAGGGGTTGATGAATGCCAAATGATAAAGAATCTCCCCGAGGGACTAAGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTGAGGCAGGTGCCACTGTTTCAGCATATGGACGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTTCCAAAAGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTAGTAAGAGGTCACCTTCAAAGCAGCCAAGTTCTACGAGACGGGGTGAAAAGTTACTGCATGTTAGGGCCAGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTATGAGAAGGCCGTTCATAGAGCGTCTTCCACCGTCATCAAGCACTTTGGTAACACTTGAAGCGACGGAGGCATTTGGGCTAGAAGCAAAGGACGTGAAGTACGTGACGCAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCATGGAGAAGGTATAAGCACCGTTTGACTTTGACATGTTTGTCCTTCATAAGGCCTCGCAGACCTGCCTCAAGGTGCACTTCCATGGAGGAGGATAGACTTCGTCTGTATACGGCATTATTAACCTCACCAAAGCCTAATCAGGATCACTTTGACTCCTGA | 2028 | 0.4822 | MATSHYVSDSRVSRMHYSSTDDDQDDDDEEEDEEDDDFKFYDTNVGAEDEPKKPDIFSGSSFWREFGVVLDPRAKWVQEWNRVFLLVSTMGLFVDPLFFYALSISDTCMCIFIDGWLVVTVTVLRCMTDTLHVWNMWLHFKMAKRSSSHARDSHASRGGYALRYLKAKRGFFFDLFVIFPIPQIVLWVVIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTVGCGLRTLCCKKPIYYGGSSIVRDKTRLAWAANREARSTCLDTADNYDYGAYAWSVQLITNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRKLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFPKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCMRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDHFDS | 675 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2026g00001 | 675 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Vium2026g00001 | 675 | Pfam | Ion transport protein | 80 | 395 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Vium2026g00001 | 675 | Pfam | Cyclic nucleotide-binding domain | 498 | 586 | IPR000595 | - | |
Vium2026g00001 | 675 | SUPERFAMILY | Voltage-gated potassium channels | 72 | 399 | - | - | |
Vium2026g00001 | 675 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 53 | 640 | - | - | |
Vium2026g00001 | 675 | MobiDBLite | consensus disorder prediction | 22 | 39 | - | - | |
Vium2026g00001 | 675 | FunFam | Cyclic nucleotide-gated ion channel 1 | 405 | 469 | - | - | |
Vium2026g00001 | 675 | FunFam | cyclic nucleotide-gated ion channel 4 | 476 | 594 | - | - | |
Vium2026g00001 | 675 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 478 | 588 | IPR000595 | - | |
Vium2026g00001 | 675 | CDD | CAP_ED | 478 | 584 | IPR000595 | - | |
Vium2026g00001 | 675 | Gene3D | Jelly Rolls | 476 | 594 | IPR014710 | - | |
Vium2026g00001 | 675 | SMART | cnmp_10 | 478 | 607 | IPR000595 | - | |
Vium2026g00001 | 675 | Gene3D | Helix hairpin bin | 403 | 469 | - | - | |
Vium2026g00001 | 675 | SUPERFAMILY | cAMP-binding domain-like | 404 | 592 | IPR018490 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2026g00001 | Vium-Chr2026 | 13866 | 19735 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2026g00001 | 58 | 674 | Ion Channels | AT5G54250 | 76.997 | 0.0 | 998 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2026g00001 | K05391 | - | gmx:100800795 | 1169.07 |