Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2026g00001 ATGGCCACCTCTCACTATGTTTCAGACTCACGTGTCTCACGCATGCACTACTCCTCCACCGATGACGACCAAGATGATGATGATGAGGAGGAAGACGAGGAAGACGATGACTTCAAATTCTACGACACTAATGTCGGTGCCGAAGACGAGCCCAAGAAGCCTGACATCTTTTCCGGCAGCAGTTTCTGGCGGGAGTTCGGGGTGGTGCTGGATCCGCGAGCCAAATGGGTCCAAGAGTGGAACAGGGTGTTCCTCCTGGTGAGCACCATGGGGCTTTTCGTGGACCCTCTGTTCTTCTACGCGCTGTCCATAAGCGACACATGTATGTGCATCTTCATCGACGGCTGGCTCGTGGTCACCGTCACCGTGCTTCGGTGCATGACCGACACGTTGCACGTGTGGAACATGTGGCTCCATTTCAAGATGGCTAAACGCTCTTCTTCTCACGCCAGAGACTCTCACGCCTCTCGCGGTGGCTATGCTCTTCGCTACCTCAAGGCTAAGAGGGGTTTCTTCTTCGACCTCTTCGTCATCTTCCCCATTCCCCAGATTGTGTTATGGGTGGTAATTCCGTCTCTTTTGGAGAAAGGATCAATTACGTTAGTGATGACAGTGTTCTTAATCATGTTTCTCTTTCAATATCTTCCCAAAATTTATCACTCCGTTTGCCTCTTGCGTCGCATGCAAAATCTTTCTGGCTACATTTTTGGAACCGTTTGGTGGGGCATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCGTGTTGGTACTTGTTAGGGTTGCAAAGGGCAGCAAAGTGTTTGGAAGAACAGTGTGCAAAAACAGTAGGTTGTGGCTTGAGAACACTTTGCTGCAAAAAGCCTATATACTATGGAGGAAGTAGCATTGTAAGGGACAAAACCAGATTGGCATGGGCTGCAAACAGGGAAGCAAGGTCTACTTGTTTGGACACTGCTGATAACTACGACTATGGTGCATACGCATGGTCTGTTCAACTCATCACCAACGATAGCAGATTGGAAAAAATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATAATTGTGCTGACTAGTGGCCTCCTTCTAGTGACTATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCGACGACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGCAAAAGGAAGTTACCACAAAGTTTCAGGCAGCGCGTGAGAAACTATGAGAGGCAGCGTTGGGCTGCCATGCGAGGGGTTGATGAATGCCAAATGATAAAGAATCTCCCCGAGGGACTAAGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTGAGGCAGGTGCCACTGTTTCAGCATATGGACGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTTCCAAAAGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTAGTAAGAGGTCACCTTCAAAGCAGCCAAGTTCTACGAGACGGGGTGAAAAGTTACTGCATGTTAGGGCCAGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTATGAGAAGGCCGTTCATAGAGCGTCTTCCACCGTCATCAAGCACTTTGGTAACACTTGAAGCGACGGAGGCATTTGGGCTAGAAGCAAAGGACGTGAAGTACGTGACGCAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCATGGAGAAGGTATAAGCACCGTTTGACTTTGACATGTTTGTCCTTCATAAGGCCTCGCAGACCTGCCTCAAGGTGCACTTCCATGGAGGAGGATAGACTTCGTCTGTATACGGCATTATTAACCTCACCAAAGCCTAATCAGGATCACTTTGACTCCTGA 2028 0.4822 MATSHYVSDSRVSRMHYSSTDDDQDDDDEEEDEEDDDFKFYDTNVGAEDEPKKPDIFSGSSFWREFGVVLDPRAKWVQEWNRVFLLVSTMGLFVDPLFFYALSISDTCMCIFIDGWLVVTVTVLRCMTDTLHVWNMWLHFKMAKRSSSHARDSHASRGGYALRYLKAKRGFFFDLFVIFPIPQIVLWVVIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTVGCGLRTLCCKKPIYYGGSSIVRDKTRLAWAANREARSTCLDTADNYDYGAYAWSVQLITNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRKLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFPKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCMRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDHFDS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2026g00001 675 MobiDBLite consensus disorder prediction 1 52 - -
Vium2026g00001 675 Pfam Ion transport protein 80 395 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium2026g00001 675 Pfam Cyclic nucleotide-binding domain 498 586 IPR000595 -
Vium2026g00001 675 SUPERFAMILY Voltage-gated potassium channels 72 399 - -
Vium2026g00001 675 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 640 - -
Vium2026g00001 675 MobiDBLite consensus disorder prediction 22 39 - -
Vium2026g00001 675 FunFam Cyclic nucleotide-gated ion channel 1 405 469 - -
Vium2026g00001 675 FunFam cyclic nucleotide-gated ion channel 4 476 594 - -
Vium2026g00001 675 ProSiteProfiles cAMP/cGMP binding motif profile. 478 588 IPR000595 -
Vium2026g00001 675 CDD CAP_ED 478 584 IPR000595 -
Vium2026g00001 675 Gene3D Jelly Rolls 476 594 IPR014710 -
Vium2026g00001 675 SMART cnmp_10 478 607 IPR000595 -
Vium2026g00001 675 Gene3D Helix hairpin bin 403 469 - -
Vium2026g00001 675 SUPERFAMILY cAMP-binding domain-like 404 592 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2026g00001 Vium-Chr2026 13866 19735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2026g00001 58 674 Ion Channels AT5G54250 76.997 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2026g00001 K05391 - gmx:100800795 1169.07