Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2023g00002 ATGGCTGGTAGTGAGGCTGAGTGGGATTGTTATAAAAATTATGCCGTTACACNGGAGCTCAAAGAGCGCCACTCCTCTGCCATCGACACAGTCAACAATCTCAGGCACCAATTGAAGCAGAAGCGTCTTTCTTTGCTCGACACAGATATCTGTGAGTATGCGAGGTCTCAGGGTAGAACACCTGTGACCTTTGGACCTACGGATCTGGTTTGCTGTAGAACCTTGCAGGGTCACACGGGAAAGGTGTATTCGTTGGATTGGACTTCTGAAAAAAGTCAGATTGTTAGTGCATCTCAAGATGGACGATTAATAGTGTGGAATGCCCTAACTAGGCAGAAAATCCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACATGTGCTTTTTCACCAACTGGTCAGTCTGTTGCATGTGGTGGTCTTGACAGTGTGTGTTCTATTTTCCATCTTAATTCACCCACTGACAAAGATGGGAATCTACCTGTTTCCCGGATGCTTAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGATACTCATTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATAACTACTGGCCTTAAAACATCTGTCTTTGGAGGGGAGTTCCAGTCTGGACACACTGCAGATGTATACAGTATCTCCATTAATGCATCCAACTCAAGAATGTTTGTATCCGGTTCTTGTGATGCAACTGCTCGATTGTGGGATACTCGCGTGGCAAGTCGAGCAGTGCGGACATTTCATGGGCATGAGGGAGATGTTAATGCAGTTAAATTCTTTCCGGATGGAAATAGATTTGGAACCGGCTCGGATGATGGTACCTGCAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTATATTATCAGCAGCACAGTGACAATGACATTCCGCCTGTGACTTCCATTGCATTCTCTGCATCAGGAAGACTTCTTTTTGCTGGATACACAAATGGAGATTGCTATGTTTGGGACACTTTACTGGCAAAGGTGGTCTTGGATTTAGGATCTCTTCAAGACTCTCATGACGACAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGGAGTGCTTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCTTTTGGAGGGCATAGGAAGACAACTTGA 1176 0.4456 MAGSEAEWDCYKNYAVTXELKERHSSAIDTVNNLRHQLKQKRLSLLDTDICEYARSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFHLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVYSISINASNSRMFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNDIPPVTSIAFSASGRLLFAGYTNGDCYVWDTLLAKVVLDLGSLQDSHDDRISCLGLSADGSALCTGSWDTNLKIWAFGGHRKTT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 203 - -
Vium2023g00002 391 Gene3D - 23 383 IPR015943 GO:0005515
Vium2023g00002 391 CDD WD40 71 383 - -
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 75 116 IPR001680 GO:0005515
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 256 IPR001680 GO:0005515
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 382 IPR001680 GO:0005515
Vium2023g00002 391 SMART WD40_4 159 199 IPR001680 GO:0005515
Vium2023g00002 391 SMART WD40_4 110 149 IPR001680 GO:0005515
Vium2023g00002 391 SMART WD40_4 206 247 IPR001680 GO:0005515
Vium2023g00002 391 SMART WD40_4 293 337 IPR001680 GO:0005515
Vium2023g00002 391 SMART WD40_4 251 290 IPR001680 GO:0005515
Vium2023g00002 391 SMART WD40_4 343 383 IPR001680 GO:0005515
Vium2023g00002 391 SMART WD40_4 68 107 IPR001680 GO:0005515
Vium2023g00002 391 PRINTS Beta G protein (transducin) signature 94 108 IPR001632 -
Vium2023g00002 391 PRINTS Beta G protein (transducin) signature 113 128 IPR001632 -
Vium2023g00002 391 PRINTS Beta G protein (transducin) signature 75 91 IPR001632 -
Vium2023g00002 391 PRINTS Beta G protein (transducin) signature 131 148 IPR001632 -
Vium2023g00002 391 ProSitePatterns Trp-Asp (WD) repeats signature. 186 200 IPR019775 -
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 75 107 - -
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 351 391 - -
Vium2023g00002 391 SUPERFAMILY WD40 repeat-like 68 382 IPR036322 GO:0005515
Vium2023g00002 391 Pfam WD domain, G-beta repeat 301 337 IPR001680 GO:0005515
Vium2023g00002 391 Pfam WD domain, G-beta repeat 164 199 IPR001680 GO:0005515
Vium2023g00002 391 Pfam WD domain, G-beta repeat 353 382 IPR001680 GO:0005515
Vium2023g00002 391 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Vium2023g00002 391 Pfam WD domain, G-beta repeat 71 107 IPR001680 GO:0005515
Vium2023g00002 391 Pfam WD domain, G-beta repeat 215 247 IPR001680 GO:0005515
Vium2023g00002 391 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Vium2023g00002 391 PRINTS G protein beta WD-40 repeat signature 94 108 IPR020472 -
Vium2023g00002 391 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 299 IPR001680 GO:0005515
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 208 IPR001680 GO:0005515
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 294 - -
Vium2023g00002 391 PIRSF GNBP_B 12 385 - -
Vium2023g00002 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 249 - -
Vium2023g00002 391 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 16 383 IPR016346 GO:0007165
Vium2023g00002 391 FunFam Guanine nucleotide-binding protein subunit beta 16 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2023g00002 Vium-Chr2023 39852 44463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2023g00002 84 384 U-box Gene Family AT1G04510 23.099 5.54e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2023g00002 K04536 - gmx:100794776 751.51