Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2020g00028 ATGGGAAAGCCCTCAGGGAAGAAGAAGGGTATCGCTACTCCGGCTACTGCAAATTCACATGCCAAACCTGCCAAGTCCTCCAAGGCTTTCGATGAAGATACAGCAATGTTCATTAACATGTCACAAGAGTTCAGAGAAGAAGGTAACAAGTTGTTTCAGAAGAAGGATCACGAAGGCGCCATGCTCAAGTACGAGAAGGCACTGAAGCTGCTTCCGAAGAACCACATAGATGTCGCACACCTTCATACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAATACCCTCGAGCCATTCACGAATGCAATTTGGCGCTGGAAGTGTCTCCAAGGTACAGCAAAGCTCTTCTGAAAAGAGCCACATGCTATCGTGAGCTTAATCGCTTGGATTTGGCGCTAAGGGATGTTAATCTTGTTTTGAGCATGGAGCCAAATAACCTCACCGCTTTGGAGCTTCTCGAGAGTCTCACGAAGTCAACGGAAGAAAAGGGGGTCCCTGTTGATGATAAAAGGGTGGCTTTTGATACCACCGTTTATCATTCTCCTTCTCCTTCTTCGCAAAAACTGAAGAAGAAGAGAGGTAAAAAAATTGAGGACAAAGTGGTTGTGGAGGAAAAGCTGGGTGTGATTGTTGAGGATAAAAAGGTGGTTTCCAAACGAATTGGGCAAGAAGGCAAGGCGGTTTCCAAAACAATAGGGCAAGAAGGCAAGGTGGTTTCAAAAACAATTGAGCAAGTAAAAGAGTTGGATTCAAAAACAATTGAGCAAGAAAAAAAGGTGGTGGAAATCAAACCTGTGGAGGAAGAAAAAACTGTCACGATCACAAGGAGCGTGAAGTTGGTGTTTGGAGAAGATATAAGGTGGGCTCAGTTACCCGTGAATTGTAGCGCGAAGTTGGTGAGGGATATAGCCAGGAATCGGTTTCCAGGTTTGAAGGGAGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACTACTACAGATGAACTAAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTACTGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAACAACAACCTATGGGAATGAAGTGCAAAGGGATGGTGAAAATCAAAATGATGGTGTTGAGAATAGGGGTACGGAAGAAGGCAGAGATGAAGATGCTGCAAAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGACACTCATGAGTTTGCAATGAAGCTGTACGGAGAAGCGATGGAAGATACGGTAGCAAGCAATGATGCTCAAGAACTTTTTGGAATTGCTGCTGATAAATTTCAAGAGATGGCTGCCTTGGCACTGTTTAACTGGGGAAGTGTTCAGATGTCCAGGGCAAGGAACCAAGGTTTCTTTTCGGAGGATGGGGCTAGAGAATCTTCCTTGGAGCATATAAAAGCTGCATATGAGTTGGCACGAAAGGAGTACGAGAAAGCAGAATTGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTACGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAAGGACTCAAATGCTGGCTTTTCTGAGGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATGATCTTTTCAAAGATGTTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGATCTCAGATACACCTTCTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCTGTTGAAAAATTTGAACTAGCTGGAACTTCTGGAACAGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCGCTTGAAGGGTTCAAAATTGAAGAGATAGTACAGGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTCCATATTGGAGCAGTTTTAA 2214 0.4368 MGKPSGKKKGIATPATANSHAKPAKSSKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALEVSPRYSKALLKRATCYRELNRLDLALRDVNLVLSMEPNNLTALELLESLTKSTEEKGVPVDDKRVAFDTTVYHSPSPSSQKLKKKRGKKIEDKVVVEEKLGVIVEDKKVVSKRIGQEGKAVSKTIGQEGKVVSKTIEQVKELDSKTIEQEKKVVEIKPVEEEKTVTITRSVKLVFGEDIRWAQLPVNCSAKLVRDIARNRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGTTTYGNEVQRDGENQNDGVENRGTEEGRDEDAAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDTVASNDAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGFFSEDGARESSLEHIKAAYELARKEYEKAELRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYALACKDSNAGFSEEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYKEQLEKMGLDDLFKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSGTDIAFIVKNHCSNETALEGFKIEEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHSILEQF 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2020g00028 737 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Vium2020g00028 737 SUPERFAMILY TPR-like 32 156 IPR011990 GO:0005515
Vium2020g00028 737 ProSiteProfiles PB1 domain profile. 277 356 IPR000270 GO:0005515
Vium2020g00028 737 SMART tpr_5 495 528 IPR019734 GO:0005515
Vium2020g00028 737 SMART tpr_5 115 148 IPR019734 GO:0005515
Vium2020g00028 737 SMART tpr_5 79 114 IPR019734 GO:0005515
Vium2020g00028 737 SMART tpr_5 41 74 IPR019734 GO:0005515
Vium2020g00028 737 SMART PB1_new 277 356 IPR000270 GO:0005515
Vium2020g00028 737 CDD PB1 280 353 - -
Vium2020g00028 737 SUPERFAMILY CAD & PB1 domains 276 365 - -
Vium2020g00028 737 Pfam PB1 domain 277 354 IPR000270 GO:0005515
Vium2020g00028 737 Coils Coil 497 524 - -
Vium2020g00028 737 SUPERFAMILY TPR-like 466 628 IPR011990 GO:0005515
Vium2020g00028 737 MobiDBLite consensus disorder prediction 359 396 - -
Vium2020g00028 737 MobiDBLite consensus disorder prediction 360 378 - -
Vium2020g00028 737 Gene3D - 263 356 - -
Vium2020g00028 737 MobiDBLite consensus disorder prediction 379 396 - -
Vium2020g00028 737 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Vium2020g00028 737 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Vium2020g00028 737 PANTHER PROTEIN CLMP1 1 735 IPR044517 -
Vium2020g00028 737 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2020g00028 Vium-Chr2020 221936 224934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2020g00028 25 148 Calmodulin-binding Proteins AT3G25230 31.579 5.95e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2020g00028 K26538 - gmx:100805760 1180.62