Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2020g00016 ATGGCTTACCACAACCCTCAAGACCTTCCACTCCACCATTTCACTGACCAACAACAACACCATAACCAAACTCTCACTGACGCATCTCTCCTCTCCTACCCTACCTCCAAACCTCCTTCTGATCCTCACCAACCAGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACCAACAGCACCACCACAAACAACAATAATGACAACAGCAACTCCGACACCAACGTTAACGCTGCCAACAACAGCGGCACCAACTTCCTCAACCTCCACACTGCGGCTGCTGACTCTGGCCAATGGCTGGCGCGTCCGATCCTCCACCGCAACCAGAGCGAGATCATCGACGATGTCACGGCAGCAGGCGACTCTGCCATGACCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCAGCAGTCGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCGAGGTTTAAGGCGGAGATTCTATCGCATCCTCTGTATGAACAGCTTCTGTCGGCACACGTGGCATGCCTTCGGATCGCCACACCGGTGGACCAGTTGCCCAGGATAGACGCTCAGCTCGCACAGTCCCAGAATGTGCTCGCCAAGTACTCTGCTTTCGGACAAGCCATTGTGGATGACAAGGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAACAGCATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGACGATGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCCGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAAAACGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTGAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGATATCAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGATTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCCTCAACTTCCACAGTGTTGAAGAGCAAGCGCAAAAGGTGA 1248 0.5128 MAYHNPQDLPLHHFTDQQQHHNQTLTDASLLSYPTSKPPSDPHQPAPNWLNNALLRTHYTNSTTTNNNNDNSNSDTNVNAANNSGTNFLNLHTAAADSGQWLARPILHRNQSEIIDDVTAAGDSAMTGAGSGDLKSEAAAVEGGGDGLMNWQNARFKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVLAKYSAFGQAIVDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2020g00016 415 Gene3D - 337 409 - -
Vium2020g00016 415 Pfam Homeobox KN domain 358 397 IPR008422 GO:0003677|GO:0006355
Vium2020g00016 415 SMART KNOX2_2 206 261 IPR005541 GO:0003677|GO:0005634
Vium2020g00016 415 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 400 - -
Vium2020g00016 415 SMART HOX_1 340 405 IPR001356 GO:0003677
Vium2020g00016 415 SMART KNOX1_2 154 198 IPR005540 GO:0003677|GO:0005634
Vium2020g00016 415 MobiDBLite consensus disorder prediction 30 49 - -
Vium2020g00016 415 FunFam homeobox protein knotted-1-like 3 isoform X1 339 400 - -
Vium2020g00016 415 Pfam KNOX1 domain 157 197 IPR005540 GO:0003677|GO:0005634
Vium2020g00016 415 ProSiteProfiles ELK domain profile. 318 338 IPR005539 GO:0003677
Vium2020g00016 415 MobiDBLite consensus disorder prediction 261 280 - -
Vium2020g00016 415 Pfam ELK domain 318 339 IPR005539 GO:0003677
Vium2020g00016 415 SUPERFAMILY Homeodomain-like 340 403 IPR009057 -
Vium2020g00016 415 CDD homeodomain 341 402 IPR001356 GO:0003677
Vium2020g00016 415 ProSiteProfiles 'Homeobox' domain profile. 338 401 IPR001356 GO:0003677
Vium2020g00016 415 MobiDBLite consensus disorder prediction 60 81 - -
Vium2020g00016 415 Pfam KNOX2 domain 210 260 IPR005541 GO:0003677|GO:0005634
Vium2020g00016 415 SMART ELK_2 318 339 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2020g00016 Vium-Chr2020 151718 155716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2020g00016 1 415 Homeobox Transcription Factor Family AT5G25220 65.708 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium2020g00016 KNOX2 3.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2020g00016 - - pvu:PHAVU_009G090500g 781.941