Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2020g00010 ATGGATCAAGATAGAGGTGAGCTATTGGATCCGGTTCATGACAAGAGTTTAAGTCATTTGGTTGAACGGGTTGCAATCGCTAGCGACAGTACAAGTGAAGAAGCTGGAACTTCGAGACGGGTCGATGAGAATTCAGGATCTGATAAGGAGCTAAAGGAGGAAGTTAAGAATCAAGACAATCATGGTCGAGAAAATTTCAGTGATAAGTTACCTGGGGTTGATCAGGGAACTTGTAATTCAAACCATTTGGTTAATCAAGAAGTGATTGAAAGTGTGATTGTGATTGACCCTATTCGGACTGAGTACATGAATGAAGATAATAGGAAATTGGAAGTAAAAGTTGAGGAATCGGGGTTGAGCTTGGGGTCCATGAAAGCAGCAAAAGAGGTGTCTGAAACTGATAAAAGTTCATGTGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTATATGACGATTTTGAAGGTGAAACAATTTGTAGGATTTGCCATCTGACTTCTGGTCAATCACCGGATGTAACAATTGTTGGCACTGCTAATAGTGCTACAAGAGTAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAACTAGGCATCGCGCACGTTCACTGTGCTGAGGCGTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGTGAGCCTGCAAAAAATGTTTCAGGTGTTAGCAGTAATGGGTTTATAGAAGAGTGGAATGAAAGAAGATTCATGGACAACGATGGTAACTCATCCCCAAGAGTTCTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTGGTAGCTTTTGTTCTGCCTTGGTTTTTTCGTGTAAATATGTTCTAG 867 0.4164 MDQDRGELLDPVHDKSLSHLVERVAIASDSTSEEAGTSRRVDENSGSDKELKEEVKNQDNHGRENFSDKLPGVDQGTCNSNHLVNQEVIESVIVIDPIRTEYMNEDNRKLEVKVEESGLSLGSMKAAKEVSETDKSSCVIDIKCSSHKKLYDDFEGETICRICHLTSGQSPDVTIVGTANSATRVDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVSSNGFIEEWNERRFMDNDGNSSPRVLGCWRGQPFCNFLMACLVVAFVLPWFFRVNMF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2020g00010 288 MobiDBLite consensus disorder prediction 24 74 - -
Vium2020g00010 288 SUPERFAMILY RING/U-box 156 224 - -
Vium2020g00010 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 226 IPR013083 -
Vium2020g00010 288 ProSiteProfiles Zinc finger RING-CH-type profile. 152 228 IPR011016 GO:0008270
Vium2020g00010 288 SMART ringv_2 159 222 IPR011016 GO:0008270
Vium2020g00010 288 PANTHER ZINC FINGER, RING-CH-TYPE 31 288 - -
Vium2020g00010 288 MobiDBLite consensus disorder prediction 35 68 - -
Vium2020g00010 288 Pfam RING-variant domain 160 221 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2020g00010 Vium-Chr2020 75360 78489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2020g00010 140 287 C3H Transcription Factor Family AT5G05830 39.869 5.78e-29 108