Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2020g00005 ATGAAAAAGAACCTTCTTTTTGTGTTTATTCTTCTTCTGCATTACGTTGCTGCTGCAGACCCTCCTGCTTCCTCTCCTCAACTTCCACCTGATCTCTCTCCAGGGGAGGGGCAGCATCACCTGCACAAGAAAATGCTAGTAGCTATTGTCGTAGCCACCATTTCACTTGCTGTACTCATTTTCGGTTTCTTATGTTTCTGGATTTATCACACTAAGTGTCCAACAAAATCCAAAACCAAAAAGGTTCAAACTCCTGGTCCAGATGCAGAGAGGGGGATCACCCTTGCACCGTTTCTGAGCAGATTCAGTTCCGTCAAAATTGTTGGTATGAAGGAGTCTGTGCCGATAGTTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTGAGGAAAGTAACATCTTGGGCGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGGTTGGATCATAATCTGGATGTTGCAGTAAAAAAACTACACTGCGAGACTCAACATGCGGAAAGAGAATTCGAGAATGAGGTGAAATTGTTAAGCAAAATTCAGCATCCGAATATAATCTCCTTACTGGGTTGTAGCGCTGATGGTGACACGAGGTTTATTGTTTATGAGTTGATGCAAAATGGATCATTGGAAGCTCATTTACATGGACCTACTCATGGCTCGGCATTGACATGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGACTAGAATATCTGCATGAGCACTGCTACCCTGCAGTGATCCACAGAGACATGAAATCTTCCAATATTCTCTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACCTTAGGATACGTAGCACCGGAGTATCTTCTAGATGGTAAATTGAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTATTGGAGCTTCTATTAGGAAGGAAGCCAGTGGAAAAACTGGCACCGACGCAATGCCAGTCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGAGCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGGACACAATGGATCATAAACACTTGTACCAGGTTGCTGCTGTAGCTGTGCTATGCGTGCAACCAGAGCCTAGCTATCGCCCTCTCATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTCGGAGGAACACTGAGAGTTTCGCAAGTGAGGCAGCATGCCTCTCTTGCTGTGAATTCCCGTCTTTGA 1287 0.4421 MKKNLLFVFILLLHYVAAADPPASSPQLPPDLSPGEGQHHLHKKMLVAIVVATISLAVLIFGFLCFWIYHTKCPTKSKTKKVQTPGPDAERGITLAPFLSRFSSVKIVGMKESVPIVDYKQIEKTTNNFEESNILGEGGFGCVYKARLDHNLDVAVKKLHCETQHAEREFENEVKLLSKIQHPNIISLLGCSADGDTRFIVYELMQNGSLEAHLHGPTHGSALTWHMRMKIALDTARGLEYLHEHCYPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRKPVEKLAPTQCQSIVTWAMPQLTDRAKLPNIVDPVIKDTMDHKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVRQHASLAVNSRL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2020g00005 428 CDD STKc_IRAK 135 402 - -
Vium2020g00005 428 SMART serkin_6 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00005 428 Pfam Protein kinase domain 129 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00005 428 Gene3D Phosphorylase Kinase; domain 1 95 204 - -
Vium2020g00005 428 PANTHER OS01G0750732 PROTEIN 38 403 - -
Vium2020g00005 428 SUPERFAMILY Protein kinase-like (PK-like) 107 399 IPR011009 -
Vium2020g00005 428 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Vium2020g00005 428 ProSiteProfiles Protein kinase domain profile. 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00005 428 Gene3D Transferase(Phosphotransferase) domain 1 205 404 - -
Vium2020g00005 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vium2020g00005 428 FunFam Protein kinase superfamily protein 96 204 - -
Vium2020g00005 428 FunFam probable receptor-like protein kinase At1g80640 205 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2020g00005 Vium-Chr2020 20757 24181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2020g00005 36 403 Receptor kinase-like Gene Family AT3G58690 43.085 9.28e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vium2020g00005 Pkinase 6.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2020g00005 - - gmx:100784795 704.901