Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2020g00004 ATGAAAAAGAACCTTCTTTTTGTGTTTATTCTTCTTCTGCATTACGTTGCTGCTGCAGACCCTCCTGCTTCCTCTCCTCAACTTCCACCTGATCTCTCTCCAGGGGAGGGGCAGCATCACCTGCACAAGAAAATGCTAGTAGCTATTGTCGTAGCCACCATTTCACTTGCTGTACTCATTTTCGGTTTCTTATGTTTCTGGATTTATCACACTAAGTGTCCAACAAAATCCAAAACCAAAAAGGTTCAAACTCCTGGTCCAGATGCAGAGAGGGGGATCACCCTTGCACCGTTTCTGAGCAGATTCAGTTCCGTCAAAATTGTTGGTATGAAGGAGTCTGTGCCGATAGTTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTGAGGAAAGTAACATCTTGGGCGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGGTTGGATCATAATCTGGATGTTGCAGTAAAAAAACTACACTGCGAGACTCAACATGCGGAAAGAGAATTCGAGAATGAGGTGAAATTGTTAAGCAAAATTCAGCATCCGAATATAATCTCCTTACTGGGTTGTAGCGCTGATGGTGACACGAGGTTTATTGTTTATGAGTTGATGCAAAATGGATCATTGGAAGCTCATTTACATGGACCTACTCATGGCTCGGCATTGACATGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGACTAGAATATCTGCATGAGCACTGCTACCCTGCAGTGATCCACAGAGACATGAAATCTTCCAATATTCTCTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTAAATTGAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTATTGGAGCTTCTATTAGGAAGGAAGCCAGTGGAAAAACTGGCACCGACGCAATGCCAGTCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGAGCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGGACACAATGGATCATAAACACTTGTACCAGGTTGCTGCTGTAGCTGTGCTATGCGTGCAACCAGAGCCTAGCTATCGCCCTCTCATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTCGGAGGAACACTGAGAGTTTCGCAAGTGAGGCAGCATGCCTCTCTTGCTGTGAATTCCCGTCTTTGA 1248 0.4415 MKKNLLFVFILLLHYVAAADPPASSPQLPPDLSPGEGQHHLHKKMLVAIVVATISLAVLIFGFLCFWIYHTKCPTKSKTKKVQTPGPDAERGITLAPFLSRFSSVKIVGMKESVPIVDYKQIEKTTNNFEESNILGEGGFGCVYKARLDHNLDVAVKKLHCETQHAEREFENEVKLLSKIQHPNIISLLGCSADGDTRFIVYELMQNGSLEAHLHGPTHGSALTWHMRMKIALDTARGLEYLHEHCYPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGKLSDKSDVYAFGVVLLELLLGRKPVEKLAPTQCQSIVTWAMPQLTDRAKLPNIVDPVIKDTMDHKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVRQHASLAVNSRL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2020g00004 415 Pfam Protein tyrosine and serine/threonine kinase 132 355 IPR001245 GO:0004672|GO:0006468
Vium2020g00004 415 FunFam Protein kinase superfamily protein 96 204 - -
Vium2020g00004 415 SMART serkin_6 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00004 415 Gene3D Transferase(Phosphotransferase) domain 1 205 391 - -
Vium2020g00004 415 FunFam probable receptor-like protein kinase At1g80640 205 391 - -
Vium2020g00004 415 Gene3D Phosphorylase Kinase; domain 1 95 204 - -
Vium2020g00004 415 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Vium2020g00004 415 SUPERFAMILY Protein kinase-like (PK-like) 107 386 IPR011009 -
Vium2020g00004 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vium2020g00004 415 ProSiteProfiles Protein kinase domain profile. 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00004 415 PANTHER OS01G0750732 PROTEIN 38 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2020g00004 Vium-Chr2020 20757 24182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2020g00004 15 332 Receptor kinase-like Gene Family AT1G80640 45.536 1.83e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vium2020g00004 PK_Tyr_Ser-Thr 6.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2020g00004 - - gmx:100784795 669.077