Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2020g00003 ATGAAAAAGAACCTTCTTTTTGTGTTTATTCTTCTTCTGCATTACGTTGCTGCTGCAGACCCTCCTGCTTCCTCTCCTCAACTTCCACCTGATCTCTCTCCAGGGGAGGGGCAGCATCACCTGCACAAGAAAATGCTAGTAGCTATTGTCGTAGCCACCATTTCACTTGCTGTACTCATTTTCGGTTTCTTATGTTTCTGGATTTATCACACTAAGTGTCCAACAAAATCCAAAACCAAAAAGGTTCAAACTCCTGGTCCAGAGAGGGGGATCACCCTTGCACCGTTTCTGAGCAGATTCAGTTCCGTCAAAATTGTTGGTATGAAGGAGTCTGTGCCGATAGTTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTGAGGAAAGTAACATCTTGGGCGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGGTTGGATCATAATCTGGATGTTGCAGTAAAAAAACTACACTGCGAGACTCAACATGCGGAAAGAGAATTCGAGAATGAGGTGAAATTGTTAAGCAAAATTCAGCATCCGAATATAATCTCCTTACTGGGTTGTAGCGCTGATGGTGACACGAGGTTTATTGTTTATGAGTTGATGCAAAATGGATCATTGGAAGCTCATTTACATGGACCTACTCATGGCTCGGCATTGACATGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGACTAGAATATCTGCATGAGCACTGCTACCCTGCAGTGATCCACAGAGACATGAAATCTTCCAATATTCTCTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACCTTAGGATACGTAGCACCGGAGTATCTTCTAGATGGTAAATTGAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTATTGGAGCTTCTATTAGGAAGGAAGCCAGTGGAAAAACTGGCACCGACGCAATGCCAGTCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGAGCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGGACACAATGGATCATAAACACTTGTACCAGGTTGCTGCTGTAGCTGTGCTATGCGTGCAACCAGAGCCTAGCTATCGCCCTCTCATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTCGGAGGAACACTGAGAGTTTCGCAAGTGAGGCAGCATGCCTCTCTTGCTGTGAATTCCCGTCTTTGA 1281 0.4418 MKKNLLFVFILLLHYVAAADPPASSPQLPPDLSPGEGQHHLHKKMLVAIVVATISLAVLIFGFLCFWIYHTKCPTKSKTKKVQTPGPERGITLAPFLSRFSSVKIVGMKESVPIVDYKQIEKTTNNFEESNILGEGGFGCVYKARLDHNLDVAVKKLHCETQHAEREFENEVKLLSKIQHPNIISLLGCSADGDTRFIVYELMQNGSLEAHLHGPTHGSALTWHMRMKIALDTARGLEYLHEHCYPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRKPVEKLAPTQCQSIVTWAMPQLTDRAKLPNIVDPVIKDTMDHKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVRQHASLAVNSRL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2020g00003 426 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Vium2020g00003 426 ProSiteProfiles Protein kinase domain profile. 127 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00003 426 Pfam Protein kinase domain 127 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00003 426 PANTHER OS01G0750732 PROTEIN 38 401 - -
Vium2020g00003 426 SUPERFAMILY Protein kinase-like (PK-like) 105 397 IPR011009 -
Vium2020g00003 426 FunFam Protein kinase superfamily protein 94 202 - -
Vium2020g00003 426 FunFam probable receptor-like protein kinase At1g80640 203 402 - -
Vium2020g00003 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vium2020g00003 426 SMART serkin_6 127 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2020g00003 426 Gene3D Phosphorylase Kinase; domain 1 94 202 - -
Vium2020g00003 426 Gene3D Transferase(Phosphotransferase) domain 1 203 402 - -
Vium2020g00003 426 CDD STKc_IRAK 133 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2020g00003 Vium-Chr2020 20757 24182 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2020g00003 36 401 Receptor kinase-like Gene Family AT3G58690 43.048 3.36e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vium2020g00003 Pkinase 6.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2020g00003 - - gmx:100784795 705.286