Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2020g00001 ATGGCTAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGACACCCCATATTAAAAACTAGGATATGGCTAGGAACTTTTGAAACTGCTGAGGATGCAGCAAGAGCCTATGATGAAGCAGCAAGGCTAATGTGCGGCACAAGGGCAAGAACAAATTTCCCTTACAACCCAAATGCATCTCAGTCATCATCTTCGAAGCTTCTATCGGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCATCACTACCAGAGCCTCAGAGAGTGGCTTCACCGAACGTCATCACCTCTGCAAGTAACTTCTCCGTAAAGAGTAACGAAACTAAAACAATGTTGCCACAGAAGAGAGAACAGGAGGAGCAAGAAGTGGAGGAGAATTGGGTTTTGAAGAAGGTTAAGGTGGAAAGGACTCAGCAGTTCAAGCCTCTTGAAGAGGATCACATTGAACAAATGATAGAGGAGTTGCTGCATTATGGCACTATTGAGCTTTGCTCTGTCATTCCCCACCATAGGCTCTTTTAA 579 0.4525 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSLPEPQRVASPNVITSASNFSVKSNETKTMLPQKREQEEQEVEENWVLKKVKVERTQQFKPLEEDHIEQMIEELLHYGTIELCSVIPHHRLF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2020g00001 192 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vium2020g00001 192 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vium2020g00001 192 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vium2020g00001 192 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vium2020g00001 192 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vium2020g00001 192 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vium2020g00001 192 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vium2020g00001 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vium2020g00001 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vium2020g00001 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2020g00001 Vium-Chr2020 6691 7995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2020g00001 1 191 AP2-EREBP Transcription Factor Family AT5G25190 65.969 2.35e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2020g00001 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2020g00001 - - gmx:100804510 312.768