Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium201g00006 ATGTCTCCCCGAACACTCCAAGAAGCTTCACTCTCTAATATGACACAGACACCACAGCACAAATCTGAAGAAACATTGTTTTACATCCTCGGAGGAATTGTTGTGCTGCTCATAGTGTTGATTTTTTTGTATGTACTTCGGAAGCGTCTAAAATGGTCACCACACAATATGACAGAACAGCAAGAGATTCGGAAACACAGAGAATCAGCAGATATGATGAAGATGATTTTTTCATCTAATCAACAGTCAGGGTCCAAGGAGTTCTTTAGTGGAAACCTCGGGACAATTAACTGCTTTGACTACCAGACATTGAAGAATGCAACCATGAATTTCCATGCAGATAATTTTCTTGGAAGTGGTGGATTTGGACCTGTTTACAAGGGAAAGTTAGCAGATGGAAGGGTGGTTGCCGTTAAGAAATTGTCTCTCAACAAATCTCAACAGGGAGAAAAAGAATTTCTGGTAGAGGTGAGAACAATCACTAGTATACAACACAAAAATCTGGTTCGTCTTCTTGGATGCTGCATAGATGGACCACAAAGGATAATTGTCTATGAATACATGAAAAACAGAAGTTTGGACCTCTTTATTCATGAAAACAGTGATCAATTTCTGAATTGGAGAACTAGATTCCAAATTATTCTGGGAGTAGCCAGAGGACTACAATACCTTCATGAGGATTCACACCAAAGAATTGTTCACAGAGACATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCAAGGATTGGGGACTTTGGGCTAGCTAGATTTTTCCCGGAAGATCAAGCTTATCTTAGCACACAGTTCGCTGGAACACTAGGTTATACTGCTCCTGAATATGCCATTAGAGGAGAATTATCAGAAAAGGCAGATATCTATAGTTTTGGAGTTCTCTTGCTTGAAATAATCTGTTGCAGGAAAAACACTGACCACACTTTGCCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTGTACGAGAATGCAAGGATATTAGACATTGTAGATCCGAAACTTCAAGAACATGGGTTGGTAGAAAAGGATGTTATGCAAGCAATCCACGTGGCTTTCTTATGTCTGCAGCCTGATGCACATTTGAGACCTCCGATGTCAGAGATTGTGGCATTGTTGACATTCAAAATTGAAATGGTGACAACACCAATGAGGCCAGCATTTCTGGATCGAGGAGCAAAAAAGGATGATGAGAAACAATCTTTAGGGGAAATATATCATGGTTTAACATCTCCCATATAA 1269 0.398 MSPRTLQEASLSNMTQTPQHKSEETLFYILGGIVVLLIVLIFLYVLRKRLKWSPHNMTEQQEIRKHRESADMMKMIFSSNQQSGSKEFFSGNLGTINCFDYQTLKNATMNFHADNFLGSGGFGPVYKGKLADGRVVAVKKLSLNKSQQGEKEFLVEVRTITSIQHKNLVRLLGCCIDGPQRIIVYEYMKNRSLDLFIHENSDQFLNWRTRFQIILGVARGLQYLHEDSHQRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDHTLPSEMQYLPEYAWKLYENARILDIVDPKLQEHGLVEKDVMQAIHVAFLCLQPDAHLRPPMSEIVALLTFKIEMVTTPMRPAFLDRGAKKDDEKQSLGEIYHGLTSPI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium201g00006 422 SUPERFAMILY Protein kinase-like (PK-like) 92 385 IPR011009 -
Vium201g00006 422 CDD STKc_IRAK 117 383 - -
Vium201g00006 422 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 188 392 - -
Vium201g00006 422 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 26 408 - -
Vium201g00006 422 Pfam Protein tyrosine and serine/threonine kinase 114 381 IPR001245 GO:0004672|GO:0006468
Vium201g00006 422 SMART serkin_6 111 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium201g00006 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vium201g00006 422 Gene3D Transferase(Phosphotransferase) domain 1 188 391 - -
Vium201g00006 422 FunFam Cysteine-rich receptor-like protein kinase 10 75 187 - -
Vium201g00006 422 Gene3D Phosphorylase Kinase; domain 1 78 187 - -
Vium201g00006 422 ProSiteProfiles Protein kinase domain profile. 111 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium201g00006 Vium-Chr201 83261 87115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium201g00006 99 398 Receptor kinase-like Gene Family AT1G56120 49.333 3.92e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium201g00006 PK_Tyr_Ser-Thr 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium201g00006 - - gmx:100799624 694.501