Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium201g00005 ATGGAAGATGATGAGGCATGCATCACCAGTCTTAGCCTTGGACTAGGAATGGGGAGCCATGTCACAAAGAAGGAGAAGCAGAAACTCCCTTCTTTGGACCTAACGTTTCAGATTTGTCCAAAGGGGGAGCAAACCATTCACGTGGATAAACAACAACGACAACAACATCTTCTTCATCATGATGATAAGGCAAAAAGGTTGTTATGTTTGAAGCACCCCACTGAAAATAGCAGCCCTGATAGCAGCAACAACAGCAGTAACGGCAGCAGAAAGAAACTGAAGCTTACCAAGGAGCAGTCAGCCACCCTTGAGGATATTTTCAAGCTGCATAACACTCTTAACCCCGCACAAAAGCAAGCACTTGCTGATCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACGGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTGTCGAAGGCCACAACCTTGAGCATTTGTTCATCGTGCGAGAAAGAATTGAAGCCTAATGAAGGGAAGAAAGGAGGCATTTCCGATGTGGTCCGAAACAGCAGCCAGAAATTGCAGAACAGCGTAGGGGTAAAGGGCATTTAG 711 0.4444 MEDDEACITSLSLGLGMGSHVTKKEKQKLPSLDLTFQICPKGEQTIHVDKQQRQQHLLHHDDKAKRLLCLKHPTENSSPDSSNNSSNGSRKKLKLTKEQSATLEDIFKLHNTLNPAQKQALADQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPKPLYIQLSKATTLSICSSCEKELKPNEGKKGGISDVVRNSSQKLQNSVGVKGI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium201g00005 236 CDD homeodomain 90 147 IPR001356 GO:0003677
Vium201g00005 236 MobiDBLite consensus disorder prediction 72 95 - -
Vium201g00005 236 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Vium201g00005 236 SUPERFAMILY Homeodomain-like 74 147 IPR009057 -
Vium201g00005 236 SMART halz 146 189 IPR003106 GO:0006355|GO:0043565
Vium201g00005 236 MobiDBLite consensus disorder prediction 74 90 - -
Vium201g00005 236 Gene3D - 68 145 - -
Vium201g00005 236 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 208 - -
Vium201g00005 236 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Vium201g00005 236 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Vium201g00005 236 Coils Coil 145 179 - -
Vium201g00005 236 SMART HOX_1 88 150 IPR001356 GO:0003677
Vium201g00005 236 Pfam Homeobox associated leucine zipper 146 179 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium201g00005 Vium-Chr201 66957 69021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium201g00005 80 204 Homeobox Transcription Factor Family AT3G60390 66.400 1.17e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium201g00005 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium201g00005 - K09338 vra:106760072 410.609