Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium201g00001 ATGGCAGTGGATATGGTGGATCCTGTTCCCAGAACCAGGATGGAGGAACAATTAGCAATACAAGAAGCTGCTTCCGCTGGTTTGAAAAGCATGGAGCATCTCATTCGCCTCCTTTCTCCCTCTCCCTGCAATTCTTCTTCTTTTTCTTCTAACAACAACAACCTCGACTGCTCCCAAATCACCGACTTCACCGTCTCCAAGTTCAAACAGGTCATTAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGTGCACCGTCCCAACCCCAACCCCAGGCCCCACCGCAACCAAACCCACAACCACAACTTCAAGCCCAACCTCAAACCCAACAAGGTTTCACTTTGGATTTCGTTAAACCCACCATTCTCAACTCTAAGCCCTGCAACAAAGACGAAACTCTCACTCTCTCCACAACCACCACCACCTCCTCTTCCTTTTTATCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGAAAGATCGGTCCTTTCCTCCCTCCCTCCGCCGCCAAACCTCCTCTCTCCTCATCCCACCGGAAAAAGTGCCGCGACGCCGCGCTCTCCGCCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACAATCCATCAGAGTCCCGGCGATAAGTTCCAAGATCGCCGACATCCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAAAAACCGATCAAGGGTTCACCTTTTCCTCGTGGGTACTACAAGTGCAGCACCGTCAAAGGGTGTCCGGCGAGGAAGCACGTGGAGCGCGCGCAAGATGACCCGAAGATGCTGATAGTGACGTACGAGGGCGAGCACCGTCACGCGCTTCCGTTGCCTGCCGCTACCGGCGGTGGTTTCGGGCTTTGA 882 0.5544 MAVDMVDPVPRTRMEEQLAIQEAASAGLKSMEHLIRLLSPSPCNSSSFSSNNNNLDCSQITDFTVSKFKQVINLLNRTGHARFRRAPSQPQPQAPPQPNPQPQLQAQPQTQQGFTLDFVKPTILNSKPCNKDETLTLSTTTTTSSSFLSSVTNDASVSDGKIGPFLPPSAAKPPLSSSHRKKCRDAALSAKPSCHCSKKRKSRVKQSIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPFPRGYYKCSTVKGCPARKHVERAQDDPKMLIVTYEGEHRHALPLPAATGGGFGL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium201g00001 293 ProSiteProfiles WRKY domain profile. 216 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium201g00001 293 SUPERFAMILY WRKY DNA-binding domain 219 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium201g00001 293 Pfam Plant zinc cluster domain 180 219 IPR018872 -
Vium201g00001 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 282 IPR044810 GO:0003700
Vium201g00001 293 MobiDBLite consensus disorder prediction 89 103 - -
Vium201g00001 293 FunFam WRKY transcription factor 65 205 282 - -
Vium201g00001 293 Pfam WRKY DNA -binding domain 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium201g00001 293 Gene3D WRKY domain 207 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium201g00001 293 SMART WRKY_cls 221 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium201g00001 293 MobiDBLite consensus disorder prediction 84 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium201g00001 Vium-Chr201 10939 12456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium201g00001 6 279 WRKY Transcription Factor Family AT2G24570 52.412 7.72e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium201g00001 WRKY 1.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium201g00001 - - gmx:100127391 417.157