Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2016g00001 ATGATTTTTCTCCCACAGATATTTTACCATCCTTCACTGATATATTTTCAGGGTCAGCTTTCCAATGGACAAGGAATTGCTGTGAAAAGGTTGTCAAGTAATTCTGGGCAAGGAGATACGGAGTTCAAGAATGAAGTGCTTTTATTGGCCAAACTTCAACACCGAAATTTAGTGAGGCTGATTGGTTTCTGTTTGGAAGGAAGTGAAAGGCTCCTTATCTACGAATTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGATCCAATAAAGAAAACACAGTTGGATTGGCAAATGCGCTACCAAATAATTAGAGGTATTACAAAAGGCATTCTCTATCTCCATGAGGATTCTCAACTACGAATTATACATCGAGATCTAAAAGCAAGCAACATTCTCTTGGACGAAAACATGTATCCTAAGATATCAGATTTTGGGATGGCAAGATTGTTTCAGGTGGATCAGACTCAAGCAAATACACACAGAGTTGTTGGAACCTATGGATATATGGCTCCTGAGTATGCAGTATATGGTCATTTTTCAGCAAAATCAGATGTTTTTAGTTATGGTGTAATGGTTCTTGAGATTGTAAGTGGGCGAAAAAGCATTGGTGCTCGTCATGGGGAGACAGTGGAGGATCTATTGAGCTTTACATGGAAAAACTGGAAGAATGGAAATATTACAAATATTGTAGACCCCACATTAATGAAGGGTTCTCGAAATGAAATGATAAGATGTATCCACATTGGGTTACTGTGTGTTCAGGAAGATATGACCAGCAGACCAACCATGGCTTCTGTAGTACTCATGCTTAATAGTTATTCTATCTCTCTCCCAATACCTTCAGAACCTGCATTTGTTGTCAATAGTAGCACAAGAAGCTATCCAAACATGTTGTCGGGTGAGCTTAATTCAGAGAAAACAGGATCGACTGAATCCACGAATAAACCAGCTCAATCTTCGGTAAATGAGGTTTCAATTACTGAGTTATACCCTCGCTAG 1002 0.3842 MIFLPQIFYHPSLIYFQGQLSNGQGIAVKRLSSNSGQGDTEFKNEVLLLAKLQHRNLVRLIGFCLEGSERLLIYEFVPNKSLDYFIFDPIKKTQLDWQMRYQIIRGITKGILYLHEDSQLRIIHRDLKASNILLDENMYPKISDFGMARLFQVDQTQANTHRVVGTYGYMAPEYAVYGHFSAKSDVFSYGVMVLEIVSGRKSIGARHGETVEDLLSFTWKNWKNGNITNIVDPTLMKGSRNEMIRCIHIGLLCVQEDMTSRPTMASVVLMLNSYSISLPIPSEPAFVVNSSTRSYPNMLSGELNSEKTGSTESTNKPAQSSVNEVSITELYPR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2016g00001 333 SUPERFAMILY Protein kinase-like (PK-like) 20 300 IPR011009 -
Vium2016g00001 333 MobiDBLite consensus disorder prediction 298 333 - -
Vium2016g00001 333 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 332 - -
Vium2016g00001 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Vium2016g00001 333 FunFam cysteine-rich receptor-like protein kinase 10 77 278 - -
Vium2016g00001 333 Gene3D Transferase(Phosphotransferase) domain 1 77 278 - -
Vium2016g00001 333 Pfam Protein tyrosine and serine/threonine kinase 22 269 IPR001245 GO:0004672|GO:0006468
Vium2016g00001 333 SMART serkin_6 16 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2016g00001 333 Gene3D Phosphorylase Kinase; domain 1 9 76 - -
Vium2016g00001 333 ProSiteProfiles Protein kinase domain profile. 1 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2016g00001 333 CDD STKc_IRAK 14 272 - -
Vium2016g00001 333 MobiDBLite consensus disorder prediction 298 327 - -
Vium2016g00001 333 FunFam Uncharacterized protein 11 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2016g00001 Vium-Chr2016 3868 5522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2016g00001 16 333 Receptor kinase-like Gene Family AT4G21410 58.385 9.43e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium2016g00001 PK_Tyr_Ser-Thr 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2016g00001 - - vum:124828801 666.766