Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2014g00004 ATGATGGTGGAAACTAATAATATCCAACGGTGGTTTAGAATGGCGTTGCTTCTCAGCTTAATCTTCTTCGGTGCCTGCTCTGACACTGCTGAGAGTGTCTCGTTTAGAAGAGGTTTGAAGACTACTCCTGCTGCTGTCAAGCTGAATAAATATGAAGACCAGGTAGTGATTGAAAACGGAATAGTTTCCCTCAATTTGTCAAATCCCGAAGGATATATTATTGGACTATACTATGACGGAACTCAGAATATACTTAATCAAAAAAATGAAGAATTTGATAGAGGGTACTTGGACGTTGTTTGGAACGAAGCAGGAAAACCTGGGATCTTTGAGAGAATCAATGGGGCAGATTTCTCAGTAATTGAAGCAAGTGATACTGTGGTGGAGGTTTCCTTTCTAAAAACATGGAAAGCTTCCATGCAAGGCTCAAGTGTCCCCATAAACATAGACTTAAGGTATATATTGCGAAGTGGTGATTCTGGGTTTTATTCATACGCAGTATTTACTCGTCCACCAGGATTACCTGCAGTCACGGTTTATCAAATCAGAATAGTTTACAAACTCGACGAAGACAGGTTCCACTACATGGCCATATCTGATACAAGGCAAAGGAAGATGCCAACTGCAGAAGACAGAAAAACGGGCAAGGTGCTTTCATATCCTGAAGCTGTTCTCTTAACCCATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATATCAATACTCGACAGAGAACAAAGATAACTCTGTTCATGGGTGGATTGCAGAGGATGATTCAGCACCAGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGCTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCCCAACTTCTCTTTCCATGTTTACTAGCACTCATTATGCTGGCAAGAAGGTAATCATAGCATTTGATGAAGGGGAGACTTATGAAAAGGTTTTTGGGCCAACTTTTGTTTACCTTAACTCTGCTCCAAGCAAAACTCAGTTTAAGTCTCTGTGGTCAGATGCTGTAGAACAGTTATCCAATGAAGAAAGAAAATGGCCTTATGATTTCATCGGATCAAAAGATTTCATTCCACCCAGTCAACGGGGAAAGGTGTCAGGAAAACTTCAAGTTAAAGATGGGGGAGGGACGGCTCAACCAGCTAAAAGTTCTTACGTTGGTCTAGCTCTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGAAGTACGCCTTGTATGCATGGGTCCCTGGTTTCATAGGAGATTACAAATATTCAATTAATGTTGGTATCACACCAGGAGACAACATCAACTTGGGTTCACTCGTATACAAACCTCCAAGAAATGGTCCTACTTTATGGGAAATTGGGATACCAGATAGGTCAGCTGCAGAGTTCTTTGTAGCAGACTATTACCCAGAGCTTGTGAACAAATTGTACCTAAAGGATAGCAAAAATGGGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGATTTATATCCAACAAAAGATCTTATTTTCACAGTCGGTGTTTCTGACTATCATAAGGACTGGTTTTATGCTCAAGTTACCAGGAGCACAAAAACGAGCAAATTCATGCCAACCACTTGGCTGATTCAATTCCAGCTTGAGAATATCATAAAGGGAGGAAACTACACACTGCAATTGGCCTTGGCATCGGCCACTAATTCTAAATTGGAGGTTAGGTTCAACAAGCCGAATTCAAACCCTCCAGACTTCGCAACAGAACGGCTAATTGGCGATGACAATGCCATAGCAAGGCACGGCATCCATGGATTGCATGAATTGTATAGTGTAGGTGTAGATAGTAATCAATTGGTAAGAGGAAAAAATACCATCTATTTGACACAGTCAAATGCCAAAACTCCATTTGAAGGAATTATGTATGATTATATTCGTTTGGAAAGTCCTACAACTAAAAAATAA 2028 0.4103 MMVETNNIQRWFRMALLLSLIFFGACSDTAESVSFRRGLKTTPAAVKLNKYEDQVVIENGIVSLNLSNPEGYIIGLYYDGTQNILNQKNEEFDRGYLDVVWNEAGKPGIFERINGADFSVIEASDTVVEVSFLKTWKASMQGSSVPINIDLRYILRSGDSGFYSYAVFTRPPGLPAVTVYQIRIVYKLDEDRFHYMAISDTRQRKMPTAEDRKTGKVLSYPEAVLLTHATDPQIRGEVDDKYQYSTENKDNSVHGWIAEDDSAPVGFWVITPSNEFRNAGPVKQELTSHVGPTSLSMFTSTHYAGKKVIIAFDEGETYEKVFGPTFVYLNSAPSKTQFKSLWSDAVEQLSNEERKWPYDFIGSKDFIPPSQRGKVSGKLQVKDGGGTAQPAKSSYVGLALPGDAGSWQIESKGYQFWTQTDKDGSFSITNIVPGKYALYAWVPGFIGDYKYSINVGITPGDNINLGSLVYKPPRNGPTLWEIGIPDRSAAEFFVADYYPELVNKLYLKDSKNGFRQYGLWERYTDLYPTKDLIFTVGVSDYHKDWFYAQVTRSTKTSKFMPTTWLIQFQLENIIKGGNYTLQLALASATNSKLEVRFNKPNSNPPDFATERLIGDDNAIARHGIHGLHELYSVGVDSNQLVRGKNTIYLTQSNAKTPFEGIMYDYIRLESPTTKK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2014g00004 675 SUPERFAMILY Starch-binding domain-like 368 466 IPR013784 GO:0030246
Vium2014g00004 675 CDD RGL4_N 54 337 - -
Vium2014g00004 675 Gene3D - 45 342 IPR014718 GO:0030246
Vium2014g00004 675 Gene3D - 367 465 - -
Vium2014g00004 675 CDD RGL4_C 480 669 - -
Vium2014g00004 675 CDD RGL4_M 371 468 IPR029413 -
Vium2014g00004 675 Gene3D - 476 669 - -
Vium2014g00004 675 SUPERFAMILY Galactose mutarotase-like 51 333 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vium2014g00004 675 Pfam Rhamnogalacturonate lyase family 42 238 IPR010325 -
Vium2014g00004 675 Pfam Polysaccharide lyase family 4, domain III 478 668 IPR029411 -
Vium2014g00004 675 SUPERFAMILY Galactose-binding domain-like 475 669 IPR008979 -
Vium2014g00004 675 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 672 - -
Vium2014g00004 675 Pfam Polysaccharide lyase family 4, domain II 392 464 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2014g00004 Vium-Chr2014 60055 66465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2014g00004 51 673 Polysaccharide Lyase AT1G09880 53.145 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2014g00004 K18195 - gmx:100781089 984.171