Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2014g00003 ATGGATACGTACTTGGACGTTGTTTGGAACGACGCAGGAAAACCTGGGATCTTTGAGAGAATCAATGGGACAAAGTTCTCAGTAATTGAAGCAAGTGATACTGTGGTGGAGGTTTCCTTTTTAAAAACATGGAATGCTGCCATGCAAGGCTCGAGTGTCCCCATAAACATAGACTTAAGGTATATATTGCGAAGTGGTGATTCTGGGTTTTATTCATACGCAATATTTACTCGTCCACAGGGATTACCTGCAGTCACGGTTTATCAAATTAGAATAGTTTACAAACTCGACGAAGACAGGTTCCACTATATGGCCATATCTGATACAAGGCAAAGAAGGATGCCAACTGCAGAAGACAGAAGAACGGGCAAGGTGCTGGCGTATCCTGAAGCTGTTCTCTTAACCAATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATATCAATACTCGACAGAGAACAAAGATAACTCTGTTCATGGGTGGATTGCAGAGGATGATTCAGCACCAGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGCTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCTCAACTTCTCTTTCCATGTTTACCAGCACTCATTATGCTGGCAAGGAGGCAGTCATTGCCTTTGATGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCAATTTTTCTTTACCTTAACTCTGCTCCAACGAAAACTCAGTTTAAGTCTCTGTGGTCAGATGCTGTAACACAGTTATCCAATGAAGAAAAAAAATGGCCTTATGATTTCATCGGATCAAAAGATTTCATTCCACCCAGTCAACGGGGAATGGTGTCAGGAAAACTTCAAGTTAAAGATGGGTACATCAGGGGAGGGACGGCTCAACCAGCTAAAAGTTCTTACGTTGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACGAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGATTTACACCTTGTATGCATGGGTCCCTGGTTTCATTGGAAATTATAAATATGAAGTCAATGTTGATATCAAACCAGGAGGCAACATCAACTTGGGTTCACTTGTATACAATCCTCCAAGAAATGGTCCTACTTTGTGGGAAATTGGGATCCCAGATAGGTCAGCTGCAGAGTTCCATGTACCAGACGTTTACCCAGAGCTTGAAAACAAATTGTACCTAAATGATAAAAAAGACGGGTTTAGGCAATACGGCTTGTGGAAACGTTACACTGATTTATATCCAACAAAAGATCTCATTTTCACAGTCGGTGTTTCTGACTATCATAAGGATTGGTTTTATGCTCAAGTTACCAGGAGCACAAACACGAGTAAATTCATACCAACCACTTGGCAGATTCAATTCCAGCTTGAGAATATCATAATGGGAGCAAACTACACACTGCAATTGGCCTTGGCATCTGCCACTAATTCTAAATTGGAGGTTAGGTTCAACAACCCGAATTCAAACCCTCCAGACTTCTCAACAGAAAAGCTAATTGGCAACGATAATGCCATAGCAAGGCACGGCATCCATGGATTGTATGAGTTGTATAGTGTAGGTGTAGACAGTAATCAATTGGTAAAAGGAAAAAACACCATCTATTTGACACAGTCAAATGCCAAAACTCTATTTGAAGGAATTATGTATGATTATATTCGTTTGGAAAGTCCTACAACTAACGAATAA 1761 0.4111 MDTYLDVVWNDAGKPGIFERINGTKFSVIEASDTVVEVSFLKTWNAAMQGSSVPINIDLRYILRSGDSGFYSYAIFTRPQGLPAVTVYQIRIVYKLDEDRFHYMAISDTRQRRMPTAEDRRTGKVLAYPEAVLLTNATDPQIRGEVDDKYQYSTENKDNSVHGWIAEDDSAPVGFWVITPSNEFRNAGPVKQELTSHVGSTSLSMFTSTHYAGKEAVIAFDEGETYKKVFGPIFLYLNSAPTKTQFKSLWSDAVTQLSNEEKKWPYDFIGSKDFIPPSQRGMVSGKLQVKDGYIRGGTAQPAKSSYVGLALPGDAGSWQIESKGYQFWTQTDEDGSFSITNIVPGIYTLYAWVPGFIGNYKYEVNVDIKPGGNINLGSLVYNPPRNGPTLWEIGIPDRSAAEFHVPDVYPELENKLYLNDKKDGFRQYGLWKRYTDLYPTKDLIFTVGVSDYHKDWFYAQVTRSTNTSKFIPTTWQIQFQLENIIMGANYTLQLALASATNSKLEVRFNNPNSNPPDFSTEKLIGNDNAIARHGIHGLYELYSVGVDSNQLVKGKNTIYLTQSNAKTLFEGIMYDYIRLESPTTNE 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2014g00003 586 CDD RGL4_C 391 580 - -
Vium2014g00003 586 CDD RGL4_N 4 245 - -
Vium2014g00003 586 Gene3D - 387 580 - -
Vium2014g00003 586 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 583 - -
Vium2014g00003 586 Pfam Rhamnogalacturonate lyase family 4 146 IPR010325 -
Vium2014g00003 586 SUPERFAMILY Starch-binding domain-like 276 377 IPR013784 GO:0030246
Vium2014g00003 586 CDD RGL4_M 279 379 IPR029413 -
Vium2014g00003 586 Gene3D - 275 377 - -
Vium2014g00003 586 Pfam Polysaccharide lyase family 4, domain III 389 579 IPR029411 -
Vium2014g00003 586 Gene3D - 19 254 IPR014718 GO:0030246
Vium2014g00003 586 Pfam Polysaccharide lyase family 4, domain II 303 375 IPR029413 -
Vium2014g00003 586 SUPERFAMILY Galactose-binding domain-like 386 580 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2014g00003 Vium-Chr2014 27472 31524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2014g00003 4 584 Polysaccharide Lyase AT1G09880 54.237 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2014g00003 K18195 - gmx:100781089 897.116