Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2014g00002 ATGCTAGATGAACTAAGTGCCCTTCAGAGTAATGGAACTTGGAAGCTTGTCCCATTACTGTCTGAAAAATTTGTTGTTGGTTGCAAGTGGAATTTTTCTATCAAAGTTGGTTCTAATGGAACTATTGATCGCCTCGAAGCTCGTCTTGTGGCTAAAGTATGTATTGATGACATTGTTCTTACAAAAAGTGATAGTGATGACATCTCTCAAATGAAACAACATCTTCGTAACCATTTTCAGACCAAAGATCTTGGCAAACTTAGATATTTCTTAAGTATTGAGGTGACACAATCCAACGATGGTATTGTTATATCTCAAAGGAAATATGCACTGGATATTTTGAAGGAAACTAGGTTGATGAATTCAAAACATGTGGACACACCCATGGATCCTAATACCAAACTTCTATCAAAACGGGGAGAGTCTATGTCAGATCCCAAGAAATATAGAAGACTAGTTGGAAAATTAAGTTATCTTACAATTACTCGTCCTGACATTTCCTTTATAGTTAGTGTGTACATTAAAGGATCTCCTGGAAAAGGGTTGTTATATGGTTCTAGTAACCATACAAGAGTGGTTTGTTATTCTGGTGCTAATTGGGCAGGATCTCCTTCTGATAGAAGATCTACTACATCTGGATATTGTGTCTCCATTGTGGCCATGCTAGATGAACTAAGTGCCCTTCAGAGTAATGGAACTTGGAAGCTTGTCCCATTACTGTCTGAAAAATTTGTTGTTGGTTGCAAGTGGAATTTTTCTATCAAAGTTGGTTCTAATGGAACTATTGATCGCCTCGAAGCTCGTCTTGTGGCTAAAGGTTACACACAAATTTTTAGGTTGGATTATGGTGATACTTTTTCTCCAGTGACAAAGATGACATCTACCAAAGATCTTGGCAAACTTAGATATTTCTTAAGTATTGAGGTGACACAATCCAACGATGGTATTGTTATATCTCAAAGGAAATATGCACTGGATATTTTGAAGGAAACTAGGTTGATGAATTCAAAACATGTGGACACACCCATGGATCCTAATACCAAACTTCTATCAAAACGGGGAGAGTCTATGTCAGATCCCAAGAAATATAGAAGACTAGTTGGAAAATTAAGTTATCTTACAATTACTCGTCCTGACATTTCCTTTATAGTTAGTGTGGATCTCCTTCTGATAGAAGATCTACTACATCTGGATATTGTGTCTCCATTGTGTTATAATCTTGTCTTCCATGAGAGGACCAAACACATTGAGACTGATTATCATTTCATTCGAGAGAAAATTGTATCTAGAGATATCAAGATTGAAAGAGGTTTGAAGACTACTCCTGCTGCTGTCAAGCTTAATAAAAATGAAGACCAGGTAGTGATTGGAAACGGCATAGTTTCCCTCAATTTGTCAAACCCCCAAGGCTATATTATTGGACTATACTATGACGGAACTCAGAATATACTTAGTCAAAAAAACGGAGAATTTGATAGAGGGTACTTGGACGTTGTTTGGAACGACGCAGGAAAACCTGGGATCTTTGAGAGAATCAATGGGACAAAGTTCTCAGTAATTGAAGCAAGTGATACTGTGGTGGAGGTTTCCTTTTTAAAAACATGGAATGCTGCCATGCAAGGCTCGAGTGTCCCCATAAACATAGACTTAAGGTATATATTGCGAAGTGGTGATTCTGGGTTTTATTCATACGCAATATTTACTCGTCCACAGGGATTACCTGCAGTCACGGTTTATCAAATTAGAATAGTTTACAAACTCGACGAAGACAGGTTCCACTATATGGCCATATCTGATACAAGGCAAAGAAGGATGCCAACTGCAGAAGACAGAAGAACGGGCAAGGTGCTGGCGTATCCTGAAGCTGTTCTCTTAACCAATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATATCAATACTCGACAGAGAACAAAGATAACTCTGTTCATGGGTGGATTGCAGAGGATGATTCAGCACCAGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGCTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCTCAACTTCTCTTTCCATGTTTACCAGCACTCATTATGCTGGCAAGGAGGCAGTCATTGCCTTTGATGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCAATTTTTCTTTACCTTAACTCTGCTCCAACGAAAACTCAGTTTAAGTCTCTGTGGTCAGATGCTGTAACACAGTTATCCAATGAAGAAAAAAAATGGCCTTATGATTTCATCGGATCAAAAGATTTCATTCCACCCAGTCAACGGGGAATGGTGTCAGGAAAACTTCAAGTTAAAGATGGGTACATCAGGGGAGGGACGGCTCAACCAGCTAAAAGTTCTTACGTTGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACGAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGATTTACACCTTGTATGCATGGGTCCCTGGTTTCATTGGAAATTATAAATATGAAGTCAATGTTGATATCAAACCAGGAGGCAACATCAACTTGGGTTCACTTGTATACAATCCTCCAAGAAATGGTCCTACTTTGTGGGAAATTGGGATCCCAGATAGGTCAGCTGCAGAGTTCCATGTACCAGACGTTTACCCAGAGCTTGAAAACAAATTGTACCTAAATGATAAAAAAGACGGGTTTAGGCAATACGGTTTGTGGAAACGTTACACTGATTTATATCCAACAAAAGATCTCATTTTCACAGTCGGTGTTTCTGACTATCATAAGGATTGGTTTTATGCTCAAGTTACCAGGAGCACAAACACGAGTAAATTCATACCAACCACTTGGCAGATTCAATTCCAGCTTGAGAATATCATAATGGGAGCAAACTACACACTGCAATTGGCCTTGGCATCTGCCACTAATTCTAAATTGGAGGTTAGGTTCAACAACCCGAATTCAAACCCTCCAGACTTCTCAACAGAAAAGCTAATTGGCAACGATAATGCCATAGCAAGGCACGGCATCCATGGATTGTATGATTTGTATAGTGTAGGTGTAGACAGTAATCAATTGGTAAAAGGAAAAAACACCATCTATTTGACACAGTCAAATGCCAAAACTCTATTTGAAGGAATTATGTATGATTATATTCGTTTGGAAAGTCCTACAACTAACGAATAA 3234 0.3908 MLDELSALQSNGTWKLVPLLSEKFVVGCKWNFSIKVGSNGTIDRLEARLVAKVCIDDIVLTKSDSDDISQMKQHLRNHFQTKDLGKLRYFLSIEVTQSNDGIVISQRKYALDILKETRLMNSKHVDTPMDPNTKLLSKRGESMSDPKKYRRLVGKLSYLTITRPDISFIVSVYIKGSPGKGLLYGSSNHTRVVCYSGANWAGSPSDRRSTTSGYCVSIVAMLDELSALQSNGTWKLVPLLSEKFVVGCKWNFSIKVGSNGTIDRLEARLVAKGYTQIFRLDYGDTFSPVTKMTSTKDLGKLRYFLSIEVTQSNDGIVISQRKYALDILKETRLMNSKHVDTPMDPNTKLLSKRGESMSDPKKYRRLVGKLSYLTITRPDISFIVSVDLLLIEDLLHLDIVSPLCYNLVFHERTKHIETDYHFIREKIVSRDIKIERGLKTTPAAVKLNKNEDQVVIGNGIVSLNLSNPQGYIIGLYYDGTQNILSQKNGEFDRGYLDVVWNDAGKPGIFERINGTKFSVIEASDTVVEVSFLKTWNAAMQGSSVPINIDLRYILRSGDSGFYSYAIFTRPQGLPAVTVYQIRIVYKLDEDRFHYMAISDTRQRRMPTAEDRRTGKVLAYPEAVLLTNATDPQIRGEVDDKYQYSTENKDNSVHGWIAEDDSAPVGFWVITPSNEFRNAGPVKQELTSHVGSTSLSMFTSTHYAGKEAVIAFDEGETYKKVFGPIFLYLNSAPTKTQFKSLWSDAVTQLSNEEKKWPYDFIGSKDFIPPSQRGMVSGKLQVKDGYIRGGTAQPAKSSYVGLALPGDAGSWQIESKGYQFWTQTDEDGSFSITNIVPGIYTLYAWVPGFIGNYKYEVNVDIKPGGNINLGSLVYNPPRNGPTLWEIGIPDRSAAEFHVPDVYPELENKLYLNDKKDGFRQYGLWKRYTDLYPTKDLIFTVGVSDYHKDWFYAQVTRSTNTSKFIPTTWQIQFQLENIIMGANYTLQLALASATNSKLEVRFNNPNSNPPDFSTEKLIGNDNAIARHGIHGLYDLYSVGVDSNQLVKGKNTIYLTQSNAKTLFEGIMYDYIRLESPTTNE 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2014g00002 1077 SUPERFAMILY DNA/RNA polymerases 50 171 IPR043502 -
Vium2014g00002 1077 CDD RGL4_N 453 736 - -
Vium2014g00002 1077 SUPERFAMILY Galactose mutarotase-like 447 732 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vium2014g00002 1077 Gene3D - 878 1071 - -
Vium2014g00002 1077 SUPERFAMILY Galactose-binding domain-like 877 1071 IPR008979 -
Vium2014g00002 1077 Pfam Rhamnogalacturonate lyase family 442 637 IPR010325 -
Vium2014g00002 1077 CDD RGL4_C 882 1071 - -
Vium2014g00002 1077 CDD RGL4_M 770 870 IPR029413 -
Vium2014g00002 1077 Pfam Polysaccharide lyase family 4, domain III 880 1070 IPR029411 -
Vium2014g00002 1077 Gene3D - 766 868 - -
Vium2014g00002 1077 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 448 1074 - -
Vium2014g00002 1077 Pfam Polysaccharide lyase family 4, domain II 794 866 IPR029413 -
Vium2014g00002 1077 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 231 296 IPR013103 -
Vium2014g00002 1077 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 46 129 IPR013103 -
Vium2014g00002 1077 SUPERFAMILY Starch-binding domain-like 767 868 IPR013784 GO:0030246
Vium2014g00002 1077 Gene3D - 444 745 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2014g00002 Vium-Chr2014 10685 27326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2014g00002 444 1075 Polysaccharide Lyase AT1G09880 52.960 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2014g00002 K18195 - gmx:100781089 954.125