Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2009g00006 ATGGCACAGTTACCTCCCAAAATACCAACCATACCCCAAAATTGGCCATCTTTTTCTCACCAAAGGGTGCCCACAATGGCCAACTTCACACCCACAACCTCATCCACCACCACCACCGTCGCCGCCGCCGCCACCACCACGGCTCCCTCCCAACCCTCATGGGTCGACGAATTCCTTGACTTCTCCTCCACCCGGCGGGGGGCTCACCGGCGATCCGCCAGCGACTCCATTGCCTTCCTCGAGACGCCGTTTCTCGAGGAATGTCGAGCCGGTTTCGACCGGCTCGACGAGGACCAGCTGATTTCCATGTTCTCTGACGACATTTCAGCAGCGGCACTACCGCCGCCACCGCTTTCATCGGCGTCCAACCCCTCCTCGCCGTCCTCCGACCAAAATAGCAACAACGAGGAGAAGCCCATGGCAATGACGTTGGACCTCAAGCCGAAGACGGAAAAGGTTGAAGAGGAGAGCTCGTGCAAGAATGAGGCGGCGGCGCTGCAATTCTCCGCCACTACCACCTCCCCTGAAACCGTTGTCGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACAGGCAATCAGCACAGAGATCAAGAGTAAGAAAACTACAATACATCTCTGAGCTTGAAAGGAGCGTAACAACATTACAGACGGAAGTATCAGCATTGTCTCCACGAGTTGCATTTCTGGACCATCAACGTTTGATTCTTAATGTCGACAATAGTGCCTTGAAGCAACGTATTGCTGCTTTGGCCCAAGACAAGATTTTCAAAGACGCTCATCAAGAGGCATTGAAGAAGGAAATAGAGAGATTGAGGCAAATCTACCACCAACAGAACCTACAGAAGATGAGTAACACAGTGAACAACAATCTTCAAAACCCATCAACATCACAGCCACAAGCAACTATTCAATCACATTCCCTTCATCAGCATCAGCAGCAGATAGCAGTGTCTCAACCATTGGGATGCAAGGACAAGGAGCAGCTCCTGAGTTGA 996 0.5171 MAQLPPKIPTIPQNWPSFSHQRVPTMANFTPTTSSTTTTVAAAATTTAPSQPSWVDEFLDFSSTRRGAHRRSASDSIAFLETPFLEECRAGFDRLDEDQLISMFSDDISAAALPPPPLSSASNPSSPSSDQNSNNEEKPMAMTLDLKPKTEKVEEESSCKNEAAALQFSATTTSPETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQIYHQQNLQKMSNTVNNNLQNPSTSQPQATIQSHSLHQHQQQIAVSQPLGCKDKEQLLS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2009g00006 331 MobiDBLite consensus disorder prediction 286 317 - -
Vium2009g00006 331 CDD bZIP_plant_RF2 183 233 IPR044759 GO:0003700|GO:0006355
Vium2009g00006 331 Pfam bZIP transcription factor 182 226 IPR004827 GO:0003700|GO:0006355
Vium2009g00006 331 FunFam Basic leucine zipper 61 181 254 - -
Vium2009g00006 331 MobiDBLite consensus disorder prediction 123 138 - -
Vium2009g00006 331 SUPERFAMILY Leucine zipper domain 182 236 IPR046347 GO:0003700|GO:0006355
Vium2009g00006 331 MobiDBLite consensus disorder prediction 111 138 - -
Vium2009g00006 331 SMART brlzneu 178 242 IPR004827 GO:0003700|GO:0006355
Vium2009g00006 331 PANTHER BASIC LEUCINE ZIPPER 34 1 304 - -
Vium2009g00006 331 Coils Coil 261 281 - -
Vium2009g00006 331 Gene3D - 181 252 - -
Vium2009g00006 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Vium2009g00006 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 232 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2009g00006 Vium-Chr2009 142069 145684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2009g00006 1 260 bZIP Transcription Factor Family AT3G58120 53.401 7.58e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2009g00006 bZIP_1 8.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2009g00006 - - gmx:100820197 463.766