Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2009g00001 ATGGATCAAACAACGGATTCAGAAATGGATCAACAGAGACGAGGCTATCATCATTCTGAACCCTGTATCCTTACTAGAGGAACCGCAAACATCTCACAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTGTGCCAGATGCTTATGACAATGCTAGGATGTATGGTGTTACACAATACAATGGCATTCAGCATCCCCATAATCTTGATATGGGTGTGCCAGCGGCAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTGGTGCTGGTGTTTTCCCTCTGCCTCTAAATCACAGAGCTTCTGAGCAGTTGCCTGGTTCAAGTACATTTGCAGTTGCTGGGGTTTCTTCAGATAATTTTGGAAGAAGTTCTGGTTTCATGGATGATGTTAGAGGTCCCTACAAAAGGAAAATTGCTGAAGGGATGAGAGGAAATTACCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCAAGACGCACTGCTGATGGTGTTGCTATGATGGATGCTGCACCATTTTCATTCCGTGTCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCAGGGCAGGTGAGTCTATCATGGTGCATGACCATAATCATATGATTCATGGAAACTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCGTGGTTGGACCAGCAGTTGAACGGTAACAATAATGATGGCCATACTACACCCTGGAATCAGTCGCTTCCAATGCCTTATGTACAAGCACCTACTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGTTTGCAGAGATATCATGATCCAGCTGGAAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAACCAACAGCACCACAATTATCATCACCCAGCAATGCCTATGCAAGGAGTAAGAGGTCATAATATCAACTTTCACCCTGCAGTAACTGCAGCATCATTTAGAGTTCCAATAAATCCTTCACGCGGTGTTGCTATTCCAGCGCAGCCTGGTTTTGAGCTAGGTCCTAGGCATGTTGGCCCTGCACCATCAGCCGGCTTCCGGATTTATCGACCTAATAGAGGGATTGTGCCTGAGACAACTCTTGGACACCGAAGTCTTCCACCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGACCATCACAGAGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGGCAATGTTAGCACCGGTTTATCAGAGGAAACAATCACAAATCAGTTGAAAACAAAATCCTATTCCTCAAGTGCTACTGGTATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCGGATTGCTTAAGGAAATGGTTGGTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAGGCTTTGACTCCTGGAAGGAAGGATGTATAG 1587 0.4417 MDQTTDSEMDQQRRGYHHSEPCILTRGTANISQPNNMHAMVRASGNTTNVDSHFVPDAYDNARMYGVTQYNGIQHPHNLDMGVPAAANLYYSGINPSSGAGVFPLPLNHRASEQLPGSSTFAVAGVSSDNFGRSSGFMDDVRGPYKRKIAEGMRGNYQYFNASSSSSIAPPNARRTADGVAMMDAAPFSFRVPSLVEVGPHGSAWSRAGESIMVHDHNHMIHGNYLGQHFQPAAPPWLDQQLNGNNNDGHTTPWNQSLPMPYVQAPTVNGGSLDSASMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHPAMPMQGVRGHNINFHPAVTAASFRVPINPSRGVAIPAQPGFELGPRHVGPAPSAGFRIYRPNRGIVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITNQLKTKSYSSSATGINLEEEACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTPGRKDV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2009g00001 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
Vium2009g00001 528 MobiDBLite consensus disorder prediction 1 21 - -
Vium2009g00001 528 FunFam E3 ubiquitin ligase BIG BROTHER 436 521 - -
Vium2009g00001 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 521 IPR013083 -
Vium2009g00001 528 MobiDBLite consensus disorder prediction 1 20 - -
Vium2009g00001 528 Pfam Ring finger domain 474 517 IPR001841 -
Vium2009g00001 528 CDD RING-H2_RNF24-like 474 520 - -
Vium2009g00001 528 SUPERFAMILY RING/U-box 469 521 - -
Vium2009g00001 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 142 521 IPR045191 GO:0061630
Vium2009g00001 528 SMART ring_2 476 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2009g00001 Vium-Chr2009 27196 31113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2009g00001 393 521 C3H Transcription Factor Family AT2G15530 48.148 1.36e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2009g00001 K19041 - gmx:100800642 807.364