Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2008g00005 ATGACTCAGTGCAGTTACCCTGAAAACAACCATACCATCATTGTGGAGAGGCACAAAGATAGCTTCATCAGAACATGTCCTACATGTGGTCATCATATCAAATGCCAGGAGCAGGCTGCTGGAATTCATGACTTACCTGGACTTCCAGCTGGAGTAAAGTTTGATCCTACTGATCAAGAGATTCTTGAGCATTTGGAAGCTAAGGTGCGTTCTGATATTCACAAGCTTCATCCGTTAATTGATGAGTTCATCCCTACTCTTGAAGGGGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTACCAGGAGTTAGCAAAGATGGGTTGATCCGACATTTCTTTCACAGGCCTTCGAAAGCATACACGACAGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCTGATGGCAGTGAGACACGGTGGCACAAAACAGGTAAGACTAGGCCAGTATACATCAGTGGGAAGTTAAAAGGGTACAAGAAAATTCTTGTGCTTTACACCAATTACAGAAAACAAAGGAAGCCTGAGAAGACAAACTGGGTGATGCATCAGTACCACCTTGGCAATAATGAAGAGGAGAAGGAAGGAGATTTGGTGGTCTCCAAAGTTTTCTATCAGACACAGCCTAGACAATGTGGTTCACTCATGAAAGACTCATATCCTGCTAAACTAAATGGTGAAAGTGTGCATGAGGTAACTAATCATAAAAGCACTGGGTTTGTTGAATTCTACAATAATTCTTTTGTATCCTTTGATCAAGGGGACCTGCATAGGCCTAGCAGTGCACAACTAGTCACCCATTTCCCTGTTCATGATGGTGCTACTTTCATTCCTTGA 840 0.431 MTQCSYPENNHTIIVERHKDSFIRTCPTCGHHIKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGDLVVSKVFYQTQPRQCGSLMKDSYPAKLNGESVHEVTNHKSTGFVEFYNNSFVSFDQGDLHRPSSAQLVTHFPVHDGATFIP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2008g00005 279 MobiDBLite consensus disorder prediction 121 143 - -
Vium2008g00005 279 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Vium2008g00005 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 20 230 IPR044799 GO:0003700
Vium2008g00005 279 FunFam NAC domain-containing protein 73 57 211 - -
Vium2008g00005 279 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Vium2008g00005 279 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Vium2008g00005 279 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Vium2008g00005 279 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2008g00005 Vium-Chr2008 41350 43816 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2008g00005 24 224 NAC Transcription Factor Family AT4G28500 79.703 5.86e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2008g00005 NAM 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2008g00005 - - gmx:100791648 569.311