Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2008g00003 ATGGACACTTTTGCTGCTGGAATTCATGACTTACCTGGACTTCCAGCTGGAGTAAAGTTTGATCCTACTGATCAAGAGATTCTTGAGCATTTGGAAGCTAAGGTGCGTTCTGATATTCACAAGCTTCATCCGTTAATTGATGAGTTCATCCCTACTCTTGAAGGGGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTACCAGGAGTTAGCAAAGATGGGTTGATCCGACATTTCTTTCACAGGCCTTCGAAAGCATACACGACAGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCTGATGGCAGTGAGACACGGTGGCACAAAACAGGTAAGACTAGGCCAGTATACATCAGTGGGAAGTTAAAAGGGTACAAGAAAATTCTTGTGCTTTACACCAATTACAGAAAACAAAGGAAGCCTGAGAAGACAAACTGGGTGATGCACCAGTACCACCTTGGCAATAATGAAGAGGAGAAGGAAGGAGAATTGGTGGTCTCCAAAGTTTTCTATCAGACACAGCCTAGACAATGTGGTTCACTCATGAAAGACTCATATCCTGCTAAACTAAACGGTGAAAGTGTGCATGAGGTAACTAATCATAAAAGCACTGGGTTTGTTGAATTCTACAATAATTCTTTTGTATCCTTTGATCAAGGGGACCAGCATAGGCCTAGCAGTGCACAACTAGTCACCCATTTCCCTGTTCATGATGGTGCTACTTTCATTCCTTGA 738 0.4309 MDTFAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDSYPAKLNGESVHEVTNHKSTGFVEFYNNSFVSFDQGDQHRPSSAQLVTHFPVHDGATFIP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2008g00003 245 MobiDBLite consensus disorder prediction 93 109 - -
Vium2008g00003 245 Pfam No apical meristem (NAM) protein 15 154 IPR003441 GO:0003677|GO:0006355
Vium2008g00003 245 FunFam NAC domain-containing protein 73 23 177 - -
Vium2008g00003 245 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Vium2008g00003 245 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 8 197 IPR044799 GO:0003700
Vium2008g00003 245 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Vium2008g00003 245 SUPERFAMILY NAC domain 8 173 IPR036093 GO:0003677|GO:0006355
Vium2008g00003 245 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2008g00003 Vium-Chr2008 35816 37495 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2008g00003 6 190 NAC Transcription Factor Family AT4G28500 82.258 2.26e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2008g00003 NAM 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2008g00003 - - vum:124828779 507.679