LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2007g00003	ATGAGTGCAAGTTCTTATGGTTTCCCTATCCCAGCATCGCTTTTGCCAAGCGATGCATCTCCCGAGTGGAACAACAAAGCAGCTAATGCATGGCAACTAACGGCAGCAACCTTAGTGGGCCTTCAGAGCGTTCCTGGGCTTGTGATCCTGTACGGCAGCATAGTTAAGAGAAAATGGGCTGTGAACTCAGCCTTCATGGCCCTGTACGCCTTTGCTTGTGTGCTCATTTGTTGGGTTTCATGGGCCCATGGCATGGCATTTGGGAATGAGCTTTTGCCATTTGTGGGAAAGCCCAACCACGCTCTGAGTGGGAAGTTTCTGCTTGCGAAGTCAAGTGCTGGGTACTTTCCAATGGCTGACTTCGTGTTCTATCAATTTGCTTTTGCCGCAATCACTGTTGTGTTGCTTGCAGGGTCTTTGCTGGGGAGAATGAACTTCTATGCGTGGATGTTGTTTGTTCCTTTGTGGCTTACCTTCTCTTACACAGTTGGTGCATTCAGCATATGGGACAAATATGGCTTCCTTGAGGGAAAAATAATAGATTATGCTGGTGGCTTCGTCATTCATTTATCTTCTGGCATTGCAGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATTTCATACGACAGGCAAAACTTTCCACCAAACAACATAATTCACGTGCTGGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAACGGTGGAGCTACTTTCCGAGTGGGAGAAATTGCATCGTTGGCGATCTTCAACACCCATCTATGTACTGCAACAAGCCTACTGGTTTGGCTTACATTGGACATGATTGTATATACCAAGAGCTCAGTCATAGGAGCCGTACAGGGAATGATCACTGGCCTCGTCTGCATCACACCAGGTGCAGGCTTGGTGGATTCATGGGCAGCAGTATTGATGGGAGCTTTGTCTGGTTCCATTCCATGGTACACTATGATGGTGTTACACAAAAAATCAGCATTCTTTCAGAGTGTGGATGATACATTAGGAGTCTTTCACACTCATGCTGTGGCTGGTCTTCTTGGGGGTCTTCTTTCTGGCGTGTTTGCAAAACCCAGGCTTCTAAGAATAATGTATCGCGATGATCAGTATGGCCCAGGATTAATCTATAGTTTTTCTAAGGGGGAATCAGTGAGTGAAGGGTTTAGGCAAATATGGTACCAGTTACTTGGAGCAGGTTTTATTATTGTTTGGAATGTAATTGTTACTAGCCTGGTTTGTGTTCTTATAAGCCACATTGTGGATCTTAGGATGCAAGAAGAGGAGCTTGAGGTTGGTGATGATGCTGCTCATGGAGAAGAAGCATACGCATTGTGGGGTGATGGAGAGAGAATGAGAGTTCCTCTTCGTCTCCATATAAGTCCAACCATTCCTTCTCTGTGCCGGCGAAGGTTTTCTATTCCTCTCACCAGGAACCAAGAAGAGTAG	1452	0.4614	MSASSYGFPIPASLLPSDASPEWNNKAANAWQLTAATLVGLQSVPGLVILYGSIVKRKWAVNSAFMALYAFACVLICWVSWAHGMAFGNELLPFVGKPNHALSGKFLLAKSSAGYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAFSIWDKYGFLEGKIIDYAGGFVIHLSSGIAGFTAAYWVGPRISYDRQNFPPNNIIHVLGGAGFLWMGWTGFNGGATFRVGEIASLAIFNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAGLVDSWAAVLMGALSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGLLSGVFAKPRLLRIMYRDDQYGPGLIYSFSKGESVSEGFRQIWYQLLGAGFIIVWNVIVTSLVCVLISHIVDLRMQEEELEVGDDAAHGEEAYALWGDGERMRVPLRLHISPTIPSLCRRRFSIPLTRNQEE	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2007g00003	483	Pfam	Ammonium Transporter Family	30	444	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Vium2007g00003	483	ProSitePatterns	Ammonium transporters signature.	181	206	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Vium2007g00003	483	PRINTS	Rhesus blood group protein signature	220	238	IPR002229	GO:0005886
	Vium2007g00003	483	PRINTS	Rhesus blood group protein signature	125	141	IPR002229	GO:0005886
	Vium2007g00003	483	PRINTS	Rhesus blood group protein signature	251	273	IPR002229	GO:0005886
	Vium2007g00003	483	PRINTS	Rhesus blood group protein signature	344	360	IPR002229	GO:0005886
	Vium2007g00003	483	Gene3D	Ammonium transporter AmtB like domains	15	447	IPR029020	-
	Vium2007g00003	483	PANTHER	AMMONIUM TRANSPORTER MEP2	13	453	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vium2007g00003	483	FunFam	Ammonium transporter	12	447	-	-
	Vium2007g00003	483	NCBIfam	ammonium transporter	29	444	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vium2007g00003	483	SUPERFAMILY	Ammonium transporter	24	425	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2007g00003	Vium-Chr2007	46677	48382	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2007g00003	118	452	Inorganic Solute Cotransporters	AT2G38290	58.806	2.59e-133	388

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2007g00003	K03320		-	gmx:100815876	875.544