Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2004g00001 ATGCCAACAAATTCTCATCCCCAAAACACCCATTGCTACAAACAATTCCCCATCTTTTTCCCTTTTCTTTCCCAATATAACCCCCCAAACCACACTTCCCAACTTCCTACCTTCAAACTCTTCCTCACCAAACACTTCCACTCTCACCTCATTCTTCTCTTCACAAACTCTAAATCACACACCCAAATGCCTGAATCAAGTAAATTTCACATCTTTCAAACCACCCTCTTCACATTCCTCTCCCTCTCCTTCCTCCATGCTTCCACAGCTCAAGCACAGTCTTCCATGGAGCCTGTGCCCACATACATCACGCACCACAGCTGGGAGCCCTCCGTTGCCATCACCGTTGGAGCCATCATCTTTGCTCTTCTTGTGATGGGCATCCTCTCCATCTACCTCCGCCGATGTGCCGAGTCACGGATCATCATCACCACCACGCAGACCACCACCACAGTCCCCTGCTCCTGCGCGCAGGGGATCAACAGGGAACTCCTTAATACCTTTCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAGGGTGAAGAAACGCTCGAATGTGCTGTGTGCTTGACCGATTTCTCAGACAAAGATGCCCTCAGACTCCTCCCCAAATGTAACCACGTGTTCCACCCTCACTGCATTGATTCCTGGCTCGCTTCCCACGTGACATGCCCTGTGTGCCGCGCGAATCTCAGCCAGGATTCGTGCCAGGTTGCCATAACTGTCCCCACCCTTCCTGATGAGGAAGTTTCCGGAAGTGAAGAAACTGTGGCAGAACCAAATCAAAACACTAACACAAACCATGCCGTGAATCAGGTTTGTGTCGGAAGTCCTGCATTGAGTGATGACACTACCAAAACAGTGTATGTAAGTGAGGAACAATCTTCATCTCCCGATGTTGTTCCTGAGTTAGAGACAAATTCAAATTCTGTGACTGGTGATGGGGTGGTTGTTGTTGCTGAGAGGAACCTTTCGAGGTCAAACTCCACTGGGCATTCTCTTGTGGGTGTGGAGAGGTACACGTTGAGGTTACCGGAAGACGTGAGGAGGTACATTCTGGTGAATCATGGAAGGAGTGTTCAGCGTTCTGCTAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAAGAGAGTTATGCCGGGAAGAGGGTGGAGAAGAGGTGGGTGATTTGCACGCCGCCATTTGTGGCAAGCCATGGCTGA 1206 0.5 MPTNSHPQNTHCYKQFPIFFPFLSQYNPPNHTSQLPTFKLFLTKHFHSHLILLFTNSKSHTQMPESSKFHIFQTTLFTFLSLSFLHASTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMGILSIYLRRCAESRIIITTTQTTTTVPCSCAQGINRELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDSCQVAITVPTLPDEEVSGSEETVAEPNQNTNTNHAVNQVCVGSPALSDDTTKTVYVSEEQSSSPDVVPELETNSNSVTGDGVVVVAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEESYAGKRVEKRWVICTPPFVASHG 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2004g00001 401 Pfam Ring finger domain 187 230 IPR001841 -
Vium2004g00001 401 PANTHER RING FINGER DOMAIN-CONTAINING 95 238 - -
Vium2004g00001 401 SMART ring_2 188 229 IPR001841 -
Vium2004g00001 401 CDD RING-H2_EL5-like 187 230 - -
Vium2004g00001 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 237 IPR013083 -
Vium2004g00001 401 FunFam E3 ubiquitin-protein ligase ATL6 148 236 - -
Vium2004g00001 401 SUPERFAMILY RING/U-box 173 236 - -
Vium2004g00001 401 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2004g00001 Vium-Chr2004 9418 11062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2004g00001 65 355 Rapid Response to Elicitors AT3G05200 36.120 2.38e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2004g00001 K10664 - gmx:100782532 470.314