Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium199g00008 ATGTTTTCTGCTTCTTCTCTTACTATCTCTTCTTCCTCTTCTTATTCTTCTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCATTGCCCTTCAGTGATCAAAGGCAATTCCCTCATGCAATTTCTCTTCGTTGTCTTAGTGCTCCTTTTCACGTTGCAAAACGACGCCTTTGCGGTCGATTCGGACAAATCCGTGCTCCTCCGTATGAAGGCGTCGTTGTCCGACCCCGCCGGCGTTCTCTCCACGTGGACCACCGCTGACGGTTCTCACTCCGGACACTGCTACTGGTCTGGCGTCCTCTGTGACGCGAACTCCCGCGTCGTCGCCGTCAACGTCACCGGAAACGGCGCCAGCCGAGCCTCGCACCCGTGCTCCGATTCCTCTAAACTCCCCCTCTACGGTTTCGGAATTCGGCGAACATGCAAAGGTAGTAAAGGTTCTCTCTTCGGAAACGTTTCTTCTGTTGGTTTCGATTTCATCAGTGAGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCTTTGGAGGTTCTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTCGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAACATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGGGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTGGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGAGGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTTCGGGGTGATGCTGCCGGTGATTTTGGGAAATTAGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGGTCAATGCCACTGGAGGTTTTTTCGCTTCCAAACTTGAGGATATTGTGGGCTCCCATGGTGAATCTGGAAGGCAGTTTTCAAGGGAACTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAACTTTTTGAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCAAGAGGCTGCATTTTCTTGATTTAAGTGGAAACAACCTTACTGGGGTGCTTTCTGCAGAACTTCACGTTCCCTGTATGAGTGTTTTTGATGTTAGTGGGAACATGTTATCTGGCTCAGTTCCTGATTTCTTCAATACCGTTTGTCCCCCTGTTCCTTCTTGGAATGGAAACCTGTTTGAAGATGGGAATGTTTCCTCGCCATATGCCTCGTTTTTTTTGTCAATGGTTCATGAAAGATCACTTTTTACATCAATGGGGGGAATTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACCGGTATTCGGTCGCTACCCGTACCTCATGACAGGCTGGGGAAGAAGAATGGTTACACGTTTCTTGTTGGTGGAAATATTCTTACAGGAACATTTCCTACATATTTATTTGAGAAATGTGATAGACTAGACGCATTCCTTTTAAATGCCAGTTATAATAATATATCTGGTCATATACCTTTCAATATCAGTCGAATGTGCAGATCATTGAAATTTTTGGACGTGTCTGGAAATCAACTTGCGGGACCTATTCCTGTTGATTTAGGGAATGTTGTATCCCTTGTATCGCTAAACCTCAGTAGGAATCAATTACAAGGTCAAATTCCCTCCAGCCTTGGCCAGATGAAGAATCTGAAGTTTCTCTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTTGACCTCTCTTCAAACTCTCTTACTGGTGAAATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCATATTCCTGATGGTTTGGCACATGTCACTTCACTCTCAGTATTCAATGTGTCTTTCAACAACTTATCTGGATATTTTCCTTCCAACAGTGGCTTGTTTAAATGCAGCAGTGCTGTTGGGAATCCATACCTAAGTCCCTGCCGTGGACTGTCTCTGACTGTGCCATCAGGGAATCAGTCAGGGCCGATTGATAGCAGCTCTTATAATTCGGAAACAGAGCAAGCTAATGGCAAGAAGAGTGGGAGTGACTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCACATTGACATTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGAAACTGTATTGGGAGTGGAGGTTTTGGAGCAACATACAAGGCGGAGATAGCATCAGGAATCCTGGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCCGAGATCAAGACCCTTGGGAGGCTTCATCATCCTAACCTTGTCACTCTGATTGGTTATCATGCTTGTGAAACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTCGAAAAGTTTATCCACGAGAGGTCCACGAGGGCTGTAGACTGGAGAATTCTTCACAAGATTGCATTGGACATTGCCAGAGCACTTGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTGAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACATCAGAGACACATGCTACCACTGGTGTAGCCGGAACATTTGGGTATGTTGCCCCTGAATATGCCATGACTTGCCGTGTTTCGGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCTTTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTATTGAAGCAAGGAAGGGCAAACGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGAGGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGTACTGTTGACTCTCTCTCCACCAGACCTACAATGAAACAAGTTGTGAGAAGGCTCAAGCAGCTTCAACCCCCATCATGCTAG 3294 0.4551 MFSASSLTISSSSSYSSSPPSSSSSSSSSPHCPSVIKGNSLMQFLFVVLVLLFTLQNDAFAVDSDKSVLLRMKASLSDPAGVLSTWTTADGSHSGHCYWSGVLCDANSRVVAVNVTGNGASRASHPCSDSSKLPLYGFGIRRTCKGSKGSLFGNVSSVGFDFISELTELRVLSLPFNALEVLNLAGNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPGSLGNCERLRTLLLYSNLLEEGIPGELGKLKSLEVLDVSRNTLSGSVPRELGNCSELSVLVLSNLFDVRGDAAGDFGKLGSVNDEVNYFEGSMPLEVFSLPNLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFLSGEFPNQLGVCKRLHFLDLSGNNLTGVLSAELHVPCMSVFDVSGNMLSGSVPDFFNTVCPPVPSWNGNLFEDGNVSSPYASFFLSMVHERSLFTSMGGIGTSVVHNFGQNSFTGIRSLPVPHDRLGKKNGYTFLVGGNILTGTFPTYLFEKCDRLDAFLLNASYNNISGHIPFNISRMCRSLKFLDVSGNQLAGPIPVDLGNVVSLVSLNLSRNQLQGQIPSSLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVFDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAHVTSLSVFNVSFNNLSGYFPSNSGLFKCSSAVGNPYLSPCRGLSLTVPSGNQSGPIDSSSYNSETEQANGKKSGSDFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVTLTFESVVQATGNFNAGNCIGSGGFGATYKAEIASGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIHERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGEDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium199g00008 1097 Gene3D Ribonuclease Inhibitor 488 720 IPR032675 -
Vium199g00008 1097 SUPERFAMILY L domain-like 165 432 - -
Vium199g00008 1097 Pfam Protein kinase domain 821 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00008 1097 MobiDBLite consensus disorder prediction 723 749 - -
Vium199g00008 1097 Gene3D Phosphorylase Kinase; domain 1 781 893 - -
Vium199g00008 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 938 950 IPR008271 GO:0004672|GO:0006468
Vium199g00008 1097 Gene3D Ribonuclease Inhibitor 312 487 IPR032675 -
Vium199g00008 1097 ProSitePatterns Protein kinases ATP-binding region signature. 824 846 IPR017441 GO:0005524
Vium199g00008 1097 Gene3D Transferase(Phosphotransferase) domain 1 894 1094 - -
Vium199g00008 1097 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 46 1091 - -
Vium199g00008 1097 SMART serkin_6 818 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00008 1097 Gene3D Ribonuclease Inhibitor 222 311 IPR032675 -
Vium199g00008 1097 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515
Vium199g00008 1097 CDD STKc_IRAK 824 1092 - -
Vium199g00008 1097 MobiDBLite consensus disorder prediction 1 29 - -
Vium199g00008 1097 SUPERFAMILY Protein kinase-like (PK-like) 800 1089 IPR011009 -
Vium199g00008 1097 SMART LRR_typ_2 166 189 IPR003591 -
Vium199g00008 1097 SMART LRR_typ_2 628 651 IPR003591 -
Vium199g00008 1097 SMART LRR_typ_2 580 604 IPR003591 -
Vium199g00008 1097 SMART LRR_typ_2 224 246 IPR003591 -
Vium199g00008 1097 SMART LRR_typ_2 197 221 IPR003591 -
Vium199g00008 1097 SMART LRR_typ_2 652 675 IPR003591 -
Vium199g00008 1097 SMART LRR_typ_2 270 294 IPR003591 -
Vium199g00008 1097 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 320 495 - -
Vium199g00008 1097 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 782 893 - -
Vium199g00008 1097 FunFam Leucine-rich repeat receptor protein kinase EMS1 626 704 - -
Vium199g00008 1097 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 200 310 - -
Vium199g00008 1097 ProSiteProfiles Protein kinase domain profile. 818 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00008 1097 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Vium199g00008 1097 SUPERFAMILY L domain-like 515 695 - -
Vium199g00008 1097 Gene3D Ribonuclease Inhibitor 63 221 IPR032675 -
Vium199g00008 1097 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 894 1096 - -
Vium199g00008 1097 FunFam LRR receptor-like serine/threonine-protein kinase 554 625 - -
Vium199g00008 1097 Pfam Leucine rich repeat N-terminal domain 63 105 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium199g00008 Vium-Chr199 84814 88728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium199g00008 63 1097 Receptor kinase-like Gene Family AT3G02130 60.305 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vium199g00008 Pkinase 8.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium199g00008 - - vum:124828178 2046.17