Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium199g00007 ATGTTTTCTGCTTCTTCTCTTACTATCTCTTCTTCCTCTTCTTATTCTTCTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCATTGCCCTTCAGTGATCAAAGGCAATTCCCTCATGCAATTTCTCTTCGTTGTCTTAGTGCTCCTTTTCACGTTGCAAAACGACGCCTTTGCGGTCGATTCGGACAAATCCGTGCTCCTCCGTATGAAGGCGTCGTTGTCCGACCCCGCCGGCGTTCTCTCCACGTGGACCACCGCTGACGGTTCTCACTCCGGACACTGCTACTGGTCTGGCGTCCTCTGTGACGCGAACTCCCGCGTCGTCGCCGTCAACGTCACCGGAAACGGCGCCAGCCGAGCCTCGCACCCGTGCTCCGATTCCTCTAAACTCCCCCTCTACGGTTTCGGAATTCGGCGAACATGCAAAGGTAGTAAAGGTTCTCTCTTCGGAAACGTTTCTTCTGTTGGTTTCGATTTCATCAGTGAGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCATGGAAAATCTAGAGGTTCTCGATTTAGAAGGGAACTTGATAAGTGGTTATCTTCCCTTGAGAATTCACGGTTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGTTTATTGGGGAGGTACCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTCTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTCGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAACATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGGGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTGGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGAGGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTTCGGGGTGATGCTGCCGGTGATTTTGGGAAATTAGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGGTCAATGCCACTGGAGGTTTTTTCGCTTCCAAACTTGAGGATATTGTGGGCTCCCATGGTGAATCTGGAAGGCAGTTTTCAAGGGAACTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAACTTTTTGAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCAAGAGGCTGCATTTTCTTGATTTAAGTGGAAACAACCTTACTGGGGTGCTTTCTGCAGAACTTCACGTTCCCTGTATGAGTGTTTTTGATGTTAGTGGGAACATGTTATCTGGCTCAGTTCCTGATTTCTTCAATACCGTTTGTCCCCCTGTTCCTTCTTGGAATGGAAACCTGTTTGAAGATGGGAATGTTTCCTCGCCATATGCCTCGTTTTTTTTGTCAATGGTTCATGAAAGATCACTTTTTACATCAATGGGGGGAATTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACCGGTATTCGGTCGCTACCCGTACCTCATGACAGGCTGGGGAAGAAGAATGGTTACACGTTTCTTGTTGGTGGAAATATTCTTACAGGAACATTTCCTACATATTTATTTGAGAAATGTGATAGACTAGACGCATTCCTTTTAAATGCCAGTTATAATAATATATCTGGTCATATACCTTTCAATATCAGTCGAATGTGCAGATCATTGAAATTTTTGGACGTGTCTGGAAATCAACTTGCGGGACCTATTCCTGTTGATTTAGGGAATGTTGTATCCCTTGTATCGCTAAACCTCAGTAGGAATCAATTACAAGGTCAAATTCCCTCCAGCCTTGGCCAGATGAAGAATCTGAAGTTTCTCTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTTGACCTCTCTTCAAACTCTCTTACTGGTGAAATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCATATTCCTGATGGTTTGGCACATGTCACTTCACTCTCAGTATTCAATGTGTCTTTCAACAACTTATCTGGATATTTTCCTTCCAACAGTGGCTTGTTTAAATGCAGCAGTGCTGTTGGGAATCCATACCTAAGTCCCTGCCGTGGACTGTCTCTGACTGTGCCATCAGGGAATCAGTCAGGGCCGATTGATAGCAGCTCTTATAATTCGGAAACAGAGCAAGCTAATGGCAAGAAGAGTGGGAGTGACTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCACATTGACATTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGAAACTGTATTGGGAGTGGAGGTTTTGGAGCAACATACAAGGCGGAGATAGCATCAGGAATCCTGGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCCGAGATCAAGACCCTTGGGAGGCTTCATCATCCTAACCTTGTCACTCTGATTGGTTATCATGCTTGTGAAACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTCGAAAAGTTTATCCACGAGAGGTCCACGAGGGCTGTAGACTGGAGAATTCTTCACAAGATTGCATTGGACATTGCCAGAGCACTTGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTGAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACATCAGAGACACATGCTACCACTGGTGTAGCCGGAACATTTGGGTATGTTGCCCCTGAATATGCCATGACTTGCCGTGTTTCGGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCTTTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTATTGAAGCAAGGAAGGGCAAACGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGAGGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGTACTGTTGACTCTCTCTCCACCAGACCTACAATGAAACAAGTTGTGAGAAGGCTCAAGCAGCTTCAACCCCCATCATGCTAG 3480 0.454 MFSASSLTISSSSSYSSSPPSSSSSSSSSPHCPSVIKGNSLMQFLFVVLVLLFTLQNDAFAVDSDKSVLLRMKASLSDPAGVLSTWTTADGSHSGHCYWSGVLCDANSRVVAVNVTGNGASRASHPCSDSSKLPLYGFGIRRTCKGSKGSLFGNVSSVGFDFISELTELRVLSLPFNALEGEIPEAIWGMENLEVLDLEGNLISGYLPLRIHGLRKLRVLNLGFNRFIGEVPSSIASLESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPGSLGNCERLRTLLLYSNLLEEGIPGELGKLKSLEVLDVSRNTLSGSVPRELGNCSELSVLVLSNLFDVRGDAAGDFGKLGSVNDEVNYFEGSMPLEVFSLPNLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFLSGEFPNQLGVCKRLHFLDLSGNNLTGVLSAELHVPCMSVFDVSGNMLSGSVPDFFNTVCPPVPSWNGNLFEDGNVSSPYASFFLSMVHERSLFTSMGGIGTSVVHNFGQNSFTGIRSLPVPHDRLGKKNGYTFLVGGNILTGTFPTYLFEKCDRLDAFLLNASYNNISGHIPFNISRMCRSLKFLDVSGNQLAGPIPVDLGNVVSLVSLNLSRNQLQGQIPSSLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVFDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAHVTSLSVFNVSFNNLSGYFPSNSGLFKCSSAVGNPYLSPCRGLSLTVPSGNQSGPIDSSSYNSETEQANGKKSGSDFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVTLTFESVVQATGNFNAGNCIGSGGFGATYKAEIASGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIHERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGEDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium199g00007 1159 Gene3D Ribonuclease Inhibitor 550 788 IPR032675 -
Vium199g00007 1159 Pfam Protein kinase domain 883 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00007 1159 SMART LRR_typ_2 238 260 IPR003591 -
Vium199g00007 1159 SMART LRR_typ_2 714 737 IPR003591 -
Vium199g00007 1159 SMART LRR_typ_2 214 237 IPR003591 -
Vium199g00007 1159 SMART LRR_typ_2 332 356 IPR003591 -
Vium199g00007 1159 SMART LRR_typ_2 690 713 IPR003591 -
Vium199g00007 1159 SMART LRR_typ_2 642 666 IPR003591 -
Vium199g00007 1159 SMART LRR_typ_2 166 190 IPR003591 -
Vium199g00007 1159 SMART LRR_typ_2 286 308 IPR003591 -
Vium199g00007 1159 Pfam Leucine rich repeat N-terminal domain 63 105 IPR013210 -
Vium199g00007 1159 SMART serkin_6 880 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00007 1159 ProSitePatterns Protein kinases ATP-binding region signature. 886 908 IPR017441 GO:0005524
Vium199g00007 1159 ProSiteProfiles Protein kinase domain profile. 880 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00007 1159 Gene3D Phosphorylase Kinase; domain 1 843 955 - -
Vium199g00007 1159 SUPERFAMILY Protein kinase-like (PK-like) 862 1151 IPR011009 -
Vium199g00007 1159 FunFam Leucine-rich repeat receptor protein kinase EMS1 688 766 - -
Vium199g00007 1159 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 262 372 - -
Vium199g00007 1159 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 956 1158 - -
Vium199g00007 1159 MobiDBLite consensus disorder prediction 785 811 - -
Vium199g00007 1159 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 382 557 - -
Vium199g00007 1159 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Vium199g00007 1159 Pfam Leucine rich repeat 644 703 IPR001611 GO:0005515
Vium199g00007 1159 MobiDBLite consensus disorder prediction 1 29 - -
Vium199g00007 1159 FunFam LRR receptor-like serine/threonine-protein kinase 616 687 - -
Vium199g00007 1159 SUPERFAMILY L domain-like 78 366 - -
Vium199g00007 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1000 1012 IPR008271 GO:0004672|GO:0006468
Vium199g00007 1159 Gene3D Transferase(Phosphotransferase) domain 1 956 1156 - -
Vium199g00007 1159 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515
Vium199g00007 1159 Gene3D Ribonuclease Inhibitor 262 368 IPR032675 -
Vium199g00007 1159 Gene3D Ribonuclease Inhibitor 373 549 IPR032675 -
Vium199g00007 1159 SUPERFAMILY L domain-like 261 759 - -
Vium199g00007 1159 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 844 955 - -
Vium199g00007 1159 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 262 1153 - -
Vium199g00007 1159 CDD STKc_IRAK 886 1154 - -
Vium199g00007 1159 Gene3D Ribonuclease Inhibitor 61 261 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium199g00007 Vium-Chr199 84814 88729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium199g00007 63 1159 Receptor kinase-like Gene Family AT3G02130 63.929 0.0 1324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vium199g00007 Pkinase 9.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium199g00007 - - vum:124828178 2204.87