Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium199g00006 ATGTTTTCTTCTTCTTCTCATTGCAGTTCAGTGATCAAATGGAGTTCCCTAGTGAAGTTTCTCTTCTTTGTGGTTCTGTTCTTGTCGCCAAGCGACGCAGTATTGGGGGATTCGGACGAATCTGCTCTCCTTCGTCTGAAGGCATCGTTTTCCGACCCCGCCGGCGTTCTCTCCACATGGACCTCCGCAGCCGGCGCTGACTCTGGCTACTGCTCTTGGTCTGGTGTCCTCTGCAACGCGAACTCCCGGGTGGTCGCCGTCAACGTCACCGGAAACGGCGGCAACCGCCGCAACGGAACCTCTCACCCGTGCAAAGGTTTCTCTCAATTCCCTCTTTAAGGATTCAGAGTTCGGCGAACGTGCGAAGGTAGTAAAGGTTCTCTCTTTGGAAACATTTCTTCTTTTAATTTCATCAGTGTGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTACAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCTTGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATCTAATAAGTGGATATCTTCCGTTTAGAATTAAAGGCTTGAGGAAGTTGAGGGTTTTGAATCTTGGGTTTAATAGGATTGTGGGGGAGATTCCTGGTTCAATTTCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGGATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGTATTCCGGTGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGTTGTATTCCAATTTGTTGGAAGAGCGTATTCCTAGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTGTCCAGGAACACTCTTAGTGGTTCTGTGCCTGGAGAGCTTGGGAATTGCTCGGAGTTGTCAGTCCTTGTGCTGTCTAATCTCTTTGATCCACGCGGGGACGTCGCTGGTGATTTTGGGAAATTGGGTTCGGTGAATGATGAGCTGAACTATTTTGAAGGGTCGATGCCTGTGGAGGTTTTGTCGCTTCCGAAGCTGAAGATATTGTGGGCTCCAATGGTGAATTTGGAAGGCAGTTTTCAGGTAAGTTGGGGTCGTTGTCAGAGCTTAGAGATGGTAAATTTGGCTCAGAATTTTTTCAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCGAGAGATTGCATTTTCTTGATTTAAGTGGAAACAACCTTACCGGGGTTCTTTCTAAAGAACTTCGCGTTCCCTGTATGAGCACGTTTGATGTTAGCGGGAACATGTTATCTGGTTCAATTCCTGATTTCTCTGATATTGTTTGTCCCCCTGAGCCTTCTTGGAATGGCAACCTATTTGAAGATGGTAATATTTCTCCACCATATGCATTCTTTTTTTTGTCAAAGGTTTGGGAGAATTCACTTTTCACAGCAATGGGGGGAGTTGGTATTTCGGTTGCTCACAACTTTGGTCGAAACAACTTCAATGGCATTCTGTCATTACCTGTGGCACGGGACAGGCTGGGGAAACAGAGCAGTTACACATTTCTGGTTGGTGAAAATAATCTTAGTGAACCATTTCCTACGTATTTATTTGAGAAATGCCATGGGTTAGATGCACTGCTTCTAAATGTCAGTTATAATAGGATATCTGGTCATATTCCTTCCAGTCTCAGTGGGATGTGCAGATCATTGAAATTTTTGGATGCATCTGGAAATCAGCTTGCAGGACGAATTCCCGTTGATTTAGGGAATATGGTCTCCCTTGCATCGCTGAACCTCAGTAAGAATCAGTTAGAAGGTGAGATTCCCACCAACCTTGGCCAGATAAAGAATCTGAAGTTTCTTTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCGACCAGCCTGGGGCAGTTGTACTCTTTGGAAATCTTGGACCTTTCTTCAAACTATCTTACTGGTGAGATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGGTGGTTTGGCATATGTCACCACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGATCATTGCCTTCTAATAGTGGCTTGATTAAATGTAGTAGTGCTGTTGGGAATCCGTTTCTAAGTCCCTGCCGTGGAGTTTCTCTATCTGTGCCGTCAGGAAGTCAACTAGCGCCTATTGATGGCAGCCCTTATAATCCAGCAACTGAACAAGCCACTGGCAAGGACAGTGGTAATGGCTTGAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTTTTTCTGTTCTTATAGCCTTGATTGTTCTATTTTTTTACACTCGGAAGTGGAAGCCTGGGTCCAGGGTTGTTGGTTCTACTAGAAAAGAAGTTACAGTGTTTACTGATATCGGCGTCCCGTTGACATTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGCATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGGTAGCACCAGGAGTCTTGGTGGCAGTCAAACGACTTGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCGGAAACCAAGACCCTTGGGAGGCTTCATCATCCTAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTTGAAAAGTTCATCCAAGAGAGGTCCACAAGGGTTGTGGATTGGAGGATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTGGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTGAAGCCCAGCAATATCTTGTTAGATGACGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACATCAGAGACACATGCTACCACTGGTGTAGCCGGAACATTTGGGTATGTTGCCCCTGAATATGCCATGACTTGCCGTGTTTCGGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCTTTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTATTGAAGCAAGGAAGGGCAAATGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGAGGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGTACTGTTGACTCTCTCTCCACCAGACCTACAATGAAACAAGTTGTGAGAAGGCTCAAGCAGCTTCAACCCCCATCATTCTAG 3405 0.454 MFSSSSHCSSVIKWSSLVKFLFFVVLFLSPSDAVLGDSDESALLRLKASFSDPAGVLSTWTSAAGADSGYCSWSGVLCNANSRVVAVNVTGNGGNRRNGTSHPCKGFSQFPLXGFRVRRTCEGSKGSLFGNISSFNFISVLTELRVLSLPYNALEGEIPEAIWGLEKLEVLDLEGNLISGYLPFRIKGLRKLRVLNLGFNRIVGEIPGSISSLESLEVLNLAGNGLNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPVSLGNCERLRTLLLYSNLLEERIPSELGKLKSLEVLDVSRNTLSGSVPGELGNCSELSVLVLSNLFDPRGDVAGDFGKLGSVNDELNYFEGSMPVEVLSLPKLKILWAPMVNLEGSFQVSWGRCQSLEMVNLAQNFFSGEFPNQLGVCERLHFLDLSGNNLTGVLSKELRVPCMSTFDVSGNMLSGSIPDFSDIVCPPEPSWNGNLFEDGNISPPYAFFFLSKVWENSLFTAMGGVGISVAHNFGRNNFNGILSLPVARDRLGKQSSYTFLVGENNLSEPFPTYLFEKCHGLDALLLNVSYNRISGHIPSSLSGMCRSLKFLDASGNQLAGRIPVDLGNMVSLASLNLSKNQLEGEIPTNLGQIKNLKFLSLAGNKLNGSIPTSLGQLYSLEILDLSSNYLTGEIPKAIENMRNLTDVLLNNNNLSGHIPGGLAYVTTLSAFNVSFNNLSGSLPSNSGLIKCSSAVGNPFLSPCRGVSLSVPSGSQLAPIDGSPYNPATEQATGKDSGNGLSSIEIASITSASAIFSVLIALIVLFFYTRKWKPGSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEVAPGVLVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRVVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGEDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSF 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium199g00006 1134 CDD STKc_IRAK 861 1129 - -
Vium199g00006 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 252 343 - -
Vium199g00006 1134 Gene3D Ribonuclease Inhibitor 236 345 IPR032675 -
Vium199g00006 1134 Gene3D Ribonuclease Inhibitor 348 488 IPR032675 -
Vium199g00006 1134 Gene3D Ribonuclease Inhibitor 517 757 IPR032675 -
Vium199g00006 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 819 930 - -
Vium199g00006 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 357 532 - -
Vium199g00006 1134 Pfam Leucine rich repeat N-terminal domain 37 79 IPR013210 -
Vium199g00006 1134 Gene3D Ribonuclease Inhibitor 36 235 IPR032675 -
Vium199g00006 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 975 987 IPR008271 GO:0004672|GO:0006468
Vium199g00006 1134 Pfam Protein kinase domain 858 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00006 1134 Gene3D Transferase(Phosphotransferase) domain 1 931 1130 - -
Vium199g00006 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 931 1133 - -
Vium199g00006 1134 FunFam Leucine-rich repeat receptor protein kinase EMS1 560 659 - -
Vium199g00006 1134 ProSitePatterns Protein kinases ATP-binding region signature. 861 883 IPR017441 GO:0005524
Vium199g00006 1134 PRINTS Leucine-rich repeat signature 665 678 - -
Vium199g00006 1134 PRINTS Leucine-rich repeat signature 428 441 - -
Vium199g00006 1134 Pfam Leucine Rich Repeat 261 283 IPR001611 GO:0005515
Vium199g00006 1134 Pfam Leucine Rich Repeat 667 689 IPR001611 GO:0005515
Vium199g00006 1134 Pfam Leucine Rich Repeat 191 213 IPR001611 GO:0005515
Vium199g00006 1134 SUPERFAMILY L domain-like 364 741 - -
Vium199g00006 1134 SUPERFAMILY L domain-like 38 342 - -
Vium199g00006 1134 SMART LRR_typ_2 213 235 IPR003591 -
Vium199g00006 1134 SMART LRR_typ_2 261 283 IPR003591 -
Vium199g00006 1134 SMART LRR_typ_2 665 689 IPR003591 -
Vium199g00006 1134 SMART LRR_typ_2 141 165 IPR003591 -
Vium199g00006 1134 SMART LRR_typ_2 617 641 IPR003591 -
Vium199g00006 1134 SMART LRR_typ_2 189 212 IPR003591 -
Vium199g00006 1134 SMART LRR_typ_2 307 331 IPR003591 -
Vium199g00006 1134 FunFam Leucine-rich repeat receptor protein kinase EMS1 660 742 - -
Vium199g00006 1134 SMART serkin_6 855 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00006 1134 Gene3D Phosphorylase Kinase; domain 1 820 930 - -
Vium199g00006 1134 SUPERFAMILY Protein kinase-like (PK-like) 837 1126 IPR011009 -
Vium199g00006 1134 ProSiteProfiles Protein kinase domain profile. 855 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium199g00006 1134 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 237 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium199g00006 Vium-Chr199 74327 78205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium199g00006 33 1133 Receptor kinase-like Gene Family AT3G02130 62.544 0.0 1295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vium199g00006 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium199g00006 - - vum:124828178 1873.98